Gene detail

Detailed information of g409.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_020600600.1, uncharacterized protein LOC110039796 [Orbicella faveolata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q02153	Guanylate cyclase soluble subunit beta-1 OS=Homo sapiens OX=9606 GN=GUCY1B1 PE=1 SV=1
P16068	Guanylate cyclase soluble subunit beta-1 OS=Bos taurus OX=9913 GN=GUCY1B1 PE=1 SV=1
Q4ZHR9	Guanylate cyclase soluble subunit beta-1 OS=Canis lupus familiaris OX=9615 GN=GUCY1B1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000033 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000046 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000068 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000396 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000431 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000769 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001299 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001542 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002699 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008995 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0015170 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0028159 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00211 all species →	Guanylate_cyc	Adenylate and Guanylate cyclase catalytic domain	Domain	Interproscan
PF07700 all species →	HNOB	Haem-NO-binding	Domain	Interproscan
PF07701 all species →	HNOBA	Heme NO binding associated	Domain	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF05193 all species →	Peptidase_M16_C	Peptidase M16 inactive domain	Domain	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF01435 all species →	Peptidase_M48	Peptidase family M48	Domain	Interproscan
PF00040 all species →	fn2	Fibronectin type II domain	Domain	Interproscan
PF03982 all species →	DAGAT	Diacylglycerol acyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR052787 all species →	Family	Mitochondrial antiviral-signaling domain-containing protein	Interproscan
IPR001054 all species →	Domain	Adenylyl cyclase class-3/4/guanylyl cyclase	Interproscan
IPR038158 all species →	Homologous_superfamily	H-NOX domain superfamily	Interproscan
IPR042463 all species →	Homologous_superfamily	Haem NO binding associated domain superfamily	Interproscan
IPR029787 all species →	Homologous_superfamily	Nucleotide cyclase	Interproscan
IPR011644 all species →	Domain	Heme NO-binding	Interproscan
IPR024096 all species →	Homologous_superfamily	NO signalling/Golgi transport ligand-binding domain superfamily	Interproscan
IPR011645 all species →	Domain	Haem NO binding associated	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR036392 all species →	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR011249 all species →	Homologous_superfamily	Metalloenzyme, LuxS/M16 peptidase-like	Interproscan
IPR007863 all species →	Domain	Peptidase M16, C-terminal	Interproscan
IPR003578 all species →	Family	Small GTPase Rho	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR050745 all species →	Family	Multifunctional regulatory proteins	Interproscan
IPR026847 all species →	Family	Vacuolar protein sorting-associated protein 13	Interproscan
IPR051156 all species →	Family	Mitochondrial and Outer Membrane Metalloprotease	Interproscan
IPR001915 all species →	Domain	Peptidase M48	Interproscan
IPR000562 all species →	Domain	Fibronectin type II domain	Interproscan
IPR036943 all species →	Homologous_superfamily	Fibronectin type II domain superfamily	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan
IPR007130 all species →	Family	Diacylglycerol acyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22955 all species →	RETROTRANSPOSON	Interproscan
PTHR21446 all species →	DUF3504 DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR45655 all species →	GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2	Interproscan
PTHR45695 all species →	LEUCOKININ RECEPTOR-RELATED	Interproscan
PTHR24072 all species →	RHO FAMILY GTPASE	Interproscan
PTHR24189 all species →	MYOTROPHIN	Interproscan
PTHR16166 all species →	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	Interproscan
PTHR22726 all species →	METALLOENDOPEPTIDASE OMA1	Interproscan
PTHR12317 all species →	DIACYLGLYCEROL O-ACYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009190 all species →	Biological Process	cyclic nucleotide biosynthetic process	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0004383 all species →	Molecular Function	guanylate cyclase activity	Interproscan
GO:0006182 all species →	Biological Process	cGMP biosynthetic process	Interproscan
GO:0008074 all species →	Cellular Component	guanylate cyclase complex, soluble	Interproscan
GO:0019934 all species →	Biological Process	cGMP-mediated signaling	Interproscan
GO:0070482 all species →	Biological Process	response to oxygen levels	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006623 all species →	Biological Process	protein targeting to vacuole	Interproscan
GO:0019898 all species →	Cellular Component	extrinsic component of membrane	Interproscan
GO:0045053 all species →	Biological Process	protein retention in Golgi apparatus	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006515 all species →	Biological Process	protein quality control for misfolded or incompletely synthesized proteins	Interproscan
GO:0034982 all species →	Biological Process	mitochondrial protein processing	Interproscan
GO:0051603 all species →	Biological Process	proteolysis involved in protein catabolic process	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008374 all species →	Molecular Function	O-acyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23010	OMA1; metalloendopeptidase OMA1, mitochondrial	EC:3.4.24.-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →