Gene detail

Detailed information of g4100.t1 in Acropora digitifera

Genomic Location: chr2Alt:21613811...21625982
NR annotation: XP_015774094.1, PREDICTED: T-complex protein 1 subunit gamma-like [Acropora digitifera]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr2Alt.g4100.t1

ACTATTGTCAAACTTTTCTCGTTCTTCTACAGTCCTTCTAGTTTTGTTCGAATTTTTCCTTGTATTTTTCTCTCTTTTTGTTGTGAAAAAATCTATTGATAAATTTGATTGGTTTATAATTTCATGTGAGAGCGCAGTTTATTGGTGTTTCTGATTGGTTAACTTTTGACTGGAGTGAACACGTGCGAGCGCCATCTTAGATTTTGGTTAAAACTTACAAAACTTTGCGATTTAGGCCTCTTTTTCCTTCTTAAAACATGTCGGGAACGCCGCTGATAGTTTTGAACCAAAACACGAGACGAGAGTCTGGTCGTAAAGTACAACTTGGAAACGTAGAGGCTGCCAAGACTATTGCAGATATAATTCGAACATGTTTAGGACCCAAGGCAATGCTTAAGATGCTGATGGACCCAATGGGAGGGATTGTTATGACAAATGATGGAAATGCAATTCTTCGTGAGATTCAAGTACAGCACCCTGCAGCTAAATCAATGATTGAGATCAGTAGAACTCAGGATGAGGAAGTTGGTGATGGCACAACCTCTGTCATAATCCTTGCTGGTGAGATGATGTCTGTGGCAGAGCCATTTCTGGAGGATCATATGCACCCTACAGTAATTATTGCCGCTTACAGGCAAGCCATGGATGACATGCTGGACATACTCAGAGAACAAATCAGTGTTCCAGTTGACACTGAGAACAGAGAAGAAATGTTGAAGATAGTCCGCAGCTCTACTGGAACAAAATTTGTACATCAATGGGGGGACTTGGCCTGTAACATTGCTTTAGATGCTGTCCAAACTGTTGCAAGAGATCAAGGTGACAGAAAAGAGATTGACATCAAGAATTATGCAAAGGTGGAAAAGATCCCTGGAGGTGAACTTGAAGATTCTCGTGTTTTGTCTGGAGTAATGCTTAATAAAGATGTTACCCATCCAAGAATGAGAAGGAGAATAGAAAACCCTCGAATAGTTCTTTTAGATTGTTCCCTGGAATACAAGAAAGGAGAAAGTCAGACCAGCTTAGAAATTTCGCAGGAAACAGACTTTAATCGTATTCTTCAGTTAGAAGAGGAGTATATTCAGAATGTTTGCAGTGACATCATAGCCATAAAGCCTGATGTTGTATTTACAGAAAAAGGCGTATCAGATTTAGCCCAACACTACTTGGTTAAGAATGGTATAACAGCCATAAGACGGATCAGAAAAACTGACAACAATCGCATTGCCAGAGCATGTGGTGCTACAATAGTGAATAGAACTGAAGAATTGAAGGAGGGAGATGTTGGAACTGCTGCTGGTCTATTTGAAATTAAAAAATTTGGAGACGAGTACTACTGCTTTGTCACAGAGTGCAAAAACCCTAAAGCATGTACCATCTTACTTAGAGGAGCTAGTAAAGACATTTTAAATGAGGTGGAGCGCAATCTACAGGATGCCATGAATGTCACAAGGAATGTAATGCTAGATCCCAGGCTTGTACCGGGAGGAGGTGCAGCTGAAATGGCGCTTGCCCATGTGTTGACAGAGAAGTCTAAATCTGTAGCGGGTGTTCAGCAGTGGCCCTACAGGGCGGTTGCTAAAGCACTGGAGGTCATTCCACGCACTCTAATACAGAACTGCGGTGCCAACACAATCAGGACCCTGACTGCTCTGAGAGCAAAACACGCTGTAGAAGGCAATACAACCTGGGGTGTGAATGGTGAAACCGGTGAAATAACAGACATGAACGAACTTGGTGTCTGGGACACGTACTCAGTCAAGGCTCAGACTCTCAAGACCTCCATCGAGACTGCTATGCTGCTTCTTCGTATTGATGACATTGTTTCTGGAACGAAGAAAGCCAGTGGCAAAGAAGGGTCACAGTCTGGAGCAGCGCCTACCACGCAAGCTGAGGATTAACCCAAATCTGTCCTCTTGTTGTAGCATATGAACGTTTATCTTCTTTTCTCAGTTTGCGACAACGAAAAAGCGGGAACAGATAGCAGTAATTTGTCGCCCTCCCTTAATCAGTTAAAGATTCTACAGGGAAATGGAAATGACAATTTCATGAATATTTGGTGCATGATTGCTCTCAGTTTTTTCACATGGGATGATTTAACTTACCGTTTTTCTTTTTGTTTAATGAGTCAGCGTCTGGCTGGCAACTCCTTTGCGTCTGTTCCATTATCTAGTGTGATTGTCAGGATTGAGGATAAGCGTTCAATTCTACTTTCTGTGAGTGGGAAAGTGTTAATCAGAATATAGAGATCAATATTATTAAAGTGCCAGATGAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P50143	T-complex protein 1 subunit gamma OS=Xenopus laevis OX=8355 GN=cct3 PE=2 SV=2
Q3T0K2	T-complex protein 1 subunit gamma OS=Bos taurus OX=9913 GN=CCT3 PE=1 SV=1
Q6P502	T-complex protein 1 subunit gamma OS=Rattus norvegicus OX=10116 GN=Cct3 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118 all species →	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002194 all species →	Conserved_site	Chaperonin TCP-1, conserved site	Interproscan
IPR012719 all species →	Family	T-complex protein 1, gamma subunit	Interproscan
IPR027413 all species →	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR017998 all species →	Family	Chaperone tailless complex polypeptide 1 (TCP-1)	Interproscan
IPR027409 all species →	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR027410 all species →	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR053374 all species →	Family	TCP-1 chaperonin-containing T-complex	Interproscan
IPR002423 all species →	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11353 all species →	CHAPERONIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0005832 all species →	Cellular Component	chaperonin-containing T-complex	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09495	CCT3, TRIC5; T-complex protein 1 subunit gamma	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.