Gene detail

Detailed information of g4134.t2 in Acropora digitifera

Genomic Location: chr2Alt:22054378...22086674
NR annotation: XP_029211526.2, semaphorin-2A-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g4134.t2

ATGATTTACAAGTACTTTATGGGGTTGTTACTTACTGTTTTACATTCTACACTAAGCAGTGCAGATGTTCTTTCCTACAACAAATGCAGAGATTGTCTGAGGTTCCCCTCTAATGGAACATTGGTATCACGTGTCGAAAGAATCCTGATTGATGAAAAAAATAACAAACTAATTGGTGGTGCAATGAATGTTCTATTCCGGCTTGAATTATCGAACATGAAAGTGTCATCAGGGGGAAATGATTCTGTATCCTTACCACCCAGCCAGTCAGCATTCCAGGATTGTTTACGGAAAAGATTGTCAAAGGTTCATTGCCAAAATTATATAAAGACATTACTATTTGATCAAAATGGGCTAATATTTGCTTGTGGGACATTTTCATTGGCTACTAGGTGTTGGAGGTTTCAGAGGGACAAAGCACTGAGTCCTTTACCTTCTGTAAATGGCATAAAAATTGATGGAACAGCTCCACGTCATGGCCATCAACAAAATATCACTGCTACCTTTACAAGTGATTATTTGTTCACCGGAATCAACATTGGCAGTGGCACAAGGCAATCAGCAGTTTACAGGAGCTCTGCAGATCCTGCAGATTCTTCAAATACTCTGGTATCAGATTTGAACAATCAGATGGTTTTAAAAGATGCCAACTTTGTATCATCATTTGAATATAAAGACAATTTTGTGTATTTTTTTCTGAGAGAAAAAGCTGTTGAAGAGAGGAAGGACATAATTTACTCAAGAGTTGCAAGAGTTTGTAAGTATGATCAAGGAGCTGATAAATATATTCTGAAAGGCAAATTCACATCATTTGTGAAAGCAAGATTATTATGCTCAATTCCTGGAGATATACCATTTGACTACGATCAAATTCAGTCTACTGTGCTTTATACTGACCCTGTCACAAATGAAGATTTTGTTTACGCGGTTTTTACCACACCACCACTTGGAGCGCCTGGGTCAGCTGTTTGCAGATATAGCATGAAGTCACTTCAGGACTTATTTGAGAAAAGTCAATACTTGGAATTGACAAGGATCAGAGGTGAAGATGCTGTGGAGTTTTGGAAACCAGTGTCACCTATGAATTTGACTGTTGTTCCAGGAAGGCCGAAGTGTGACAGCACTCTTGACACCAGGAAATATCAAGTGGCTGTGTATACATTTGCTAATAGACACAGTCTATTAGCTGATTATCTTCAATCAAAGCCTCTCTTTACTCGAGCAGATACAAGATTCACAACCATTGAGGTAGATCATGTTAAGGAAAGCAGTAGGGCAGTTGTGCCTGTCATGTTCATTTCATCAGACAATGGAACTGTGTTCAAAGTTTTCAACAACAAATCTGGCGATAACAATCCTGTTATTTTAGAACAGATCAATCTTTTGAAGTACCCAGGTGTTATCTACACCATGAGACTGTATAAGGGGGCTGTTTACATTGGAAGCGCGTCAAGTGTCGTCAAATTACCCGTACAACATTGCAATCGATACCAGACCTGCAGGGAGTGCGTTGCTACTTTGGACCCATACTGTGGTTGGAGCAAGAACAAATGCACAACATACGAAAACAAAAAAGAAAATCTCTGGGCGCAGGACGTTATTCGTGGGAACTTCACCAAAGTTTGTCCTCAAGAACCCCCAACATGTTTACTGAGCATTATTAAGAAGCAAGTAGGAGGTACAACTACATTGGCCTGTCGCCTTCAAAATGGAATACCGCTTCCTAAAGTGACTAAATGGACTAAAGACTCAAAAGATTTGCCGGTTGGTGGTGCAGATTACCAAATCAAACCAGGAAAGGACCAGTATCAAGGATTCCTTGAAATCCACAACTTTGGCATCAATAATCTTGGTGTTTATGCATGTGTGATCGCCAACGATCTGGGTTCTTTCTCTTGCGCCATGAACATCAGTGGAACATTACCAATTGTATCATCAGCCCTCGTTAAGATCAATGGTTCATCTTTGTTTGTTTGCAATGCCACTGGTCTACCCACCCCACGTGTTGCTGTACACAAAGTGATTAGTGGTACCACGCGTGTGATCAACTGGCGTCAAGTTCCAATCAACGTAGACTCCGGTCAGCGGGTGTATTATTGCACAGCTCAGAATCAGTTTGGATCATCCTTCAGCAAAGCTGTTACTTTAAAGGATAAGCAAGTAAAGGCAGAGATAAGAATCACAAATGAAGAATGGAGTTCCGAGCTTTTGGATGAAAAATCGGAAAAATACAAAACCTTGGCTGGTGAAATCCGAACTGCGGTAGAAGACATTTATAGGTCAAATCCCGCCTTGGTTGGATTTAAAGCGATCACATTTAGCAAAGGGAGTGTTATCTGTAAATTGACGTTGATATTTGCTGCTACTCCTTCAAACAAGAACGCTGAGTTGTTAGCCGATTTGCAGAAAGAAGTATCTGCTGGCAAAGTGGGATATTTCACGGTGGATAGATCTCGCCCAGTTGATGTGGAACCCGACGAAGAACAAACAACAACTCAGCCGGTTTTTAGTACTGTTCAGGTGACAAGCGATCATTCCCCAACTACTCCTCAAATTCAAGAACCTCCCACGTCATTGCGAATGATAGAGGCCGCTATCATCTACATACCTTAG

Transcript

chr2Alt.g4134.t2

ATTCTGTTAACTGGTTATATAACTCAATAATATTGCAAACTTTGCTGATCAGTTGCATGTATACTAGAGTAAAATAGTTATTCAGAAGTTTGCAGGTATCATGATTTACAAGTACTTTATGGGGTTGTTACTTACTGTTTTACATTCTACACTAAGCAGTGCAGATGTTCTTTCCTACAACAAATGCAGAGATTGTCTGAGGTTCCCCTCTAATGGAACATTGGTATCACGTGTCGAAAGAATCCTGATTGATGAAAAAAATAACAAACTAATTGGTGGTGCAATGAATGTTCTATTCCGGCTTGAATTATCGAACATGAAAGTGTCATCAGGGGGAAATGATTCTGTATCCTTACCACCCAGCCAGTCAGCATTCCAGGATTGTTTACGGAAAAGATTGTCAAAGGTTCATTGCCAAAATTATATAAAGACATTACTATTTGATCAAAATGGGCTAATATTTGCTTGTGGGACATTTTCATTGGCTACTAGGTGTTGGAGGTTTCAGAGGGACAAAGCACTGAGTCCTTTACCTTCTGTAAATGGCATAAAAATTGATGGAACAGCTCCACGTCATGGCCATCAACAAAATATCACTGCTACCTTTACAAGTGATTATTTGTTCACCGGAATCAACATTGGCAGTGGCACAAGGCAATCAGCAGTTTACAGGAGCTCTGCAGATCCTGCAGATTCTTCAAATACTCTGGTATCAGATTTGAACAATCAGATGGTTTTAAAAGATGCCAACTTTGTATCATCATTTGAATATAAAGACAATTTTGTGTATTTTTTTCTGAGAGAAAAAGCTGTTGAAGAGAGGAAGGACATAATTTACTCAAGAGTTGCAAGAGTTTGTAAGTATGATCAAGGAGCTGATAAATATATTCTGAAAGGCAAATTCACATCATTTGTGAAAGCAAGATTATTATGCTCAATTCCTGGAGATATACCATTTGACTACGATCAAATTCAGTCTACTGTGCTTTATACTGACCCTGTCACAAATGAAGATTTTGTTTACGCGGTTTTTACCACACCACCACTTGGAGCGCCTGGGTCAGCTGTTTGCAGATATAGCATGAAGTCACTTCAGGACTTATTTGAGAAAAGTCAATACTTGGAATTGACAAGGATCAGAGGTGAAGATGCTGTGGAGTTTTGGAAACCAGTGTCACCTATGAATTTGACTGTTGTTCCAGGAAGGCCGAAGTGTGACAGCACTCTTGACACCAGGAAATATCAAGTGGCTGTGTATACATTTGCTAATAGACACAGTCTATTAGCTGATTATCTTCAATCAAAGCCTCTCTTTACTCGAGCAGATACAAGATTCACAACCATTGAGGTAGATCATGTTAAGGAAAGCAGTAGGGCAGTTGTGCCTGTCATGTTCATTTCATCAGACAATGGAACTGTGTTCAAAGTTTTCAACAACAAATCTGGCGATAACAATCCTGTTATTTTAGAACAGATCAATCTTTTGAAGTACCCAGGTGTTATCTACACCATGAGACTGTATAAGGGGGCTGTTTACATTGGAAGCGCGTCAAGTGTCGTCAAATTACCCGTACAACATTGCAATCGATACCAGACCTGCAGGGAGTGCGTTGCTACTTTGGACCCATACTGTGGTTGGAGCAAGAACAAATGCACAACATACGAAAACAAAAAAGAAAATCTCTGGGCGCAGGACGTTATTCGTGGGAACTTCACCAAAGTTTGTCCTCAAGAACCCCCAACATGTTTACTGAGCATTATTAAGAAGCAAGTAGGAGGTACAACTACATTGGCCTGTCGCCTTCAAAATGGAATACCGCTTCCTAAAGTGACTAAATGGACTAAAGACTCAAAAGATTTGCCGGTTGGTGGTGCAGATTACCAAATCAAACCAGGAAAGGACCAGTATCAAGGATTCCTTGAAATCCACAACTTTGGCATCAATAATCTTGGTGTTTATGCATGTGTGATCGCCAACGATCTGGGTTCTTTCTCTTGCGCCATGAACATCAGTGGAACATTACCAATTGTATCATCAGCCCTCGTTAAGATCAATGGTTCATCTTTGTTTGTTTGCAATGCCACTGGTCTACCCACCCCACGTGTTGCTGTACACAAAGTGATTAGTGGTACCACGCGTGTGATCAACTGGCGTCAAGTTCCAATCAACGTAGACTCCGGTCAGCGGGTGTATTATTGCACAGCTCAGAATCAGTTTGGATCATCCTTCAGCAAAGCTGTTACTTTAAAGGATAAGCAAGTAAAGGCAGAGATAAGAATCACAAATGAAGAATGGAGTTCCGAGCTTTTGGATGAAAAATCGGAAAAATACAAAACCTTGGCTGGTGAAATCCGAACTGCGGTAGAAGACATTTATAGGTCAAATCCCGCCTTGGTTGGATTTAAAGCGATCACATTTAGCAAAGGGAGTGTTATCTGTAAATTGACGTTGATATTTGCTGCTACTCCTTCAAACAAGAACGCTGAGTTGTTAGCCGATTTGCAGAAAGAAGTATCTGCTGGCAAAGTGGGATATTTCACGGTGGATAGATCTCGCCCAGTTGATGTGGAACCCGACGAAGAACAAACAACAACTCAGCCGGTTTTTAGTACTGTTCAGGTGACAAGCGATCATTCCCCAACTACTCCTCAAATTCAAGAACCTCCCACGTCATTGCGAATGATAGAGGCCGCTATCATCTACATACCTTAGTCACTGCAATGGGACAGTCAAAAGACAGAGCGAGCTATATTCTTGCCTAATCAGTTATTACCTTGTTGGCTGCAGTTGTTCAAATAGTGGATAGCGCTATCTACTGGATAAATCATGCAAGCGGAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q24322	Semaphorin-1A OS=Drosophila melanogaster OX=7227 GN=Sema1a PE=1 SV=3
Q26972	Semaphorin-1A OS=Tribolium confusum OX=7071 GN=SEMA-1A PE=2 SV=1
Q60519	Semaphorin-5B OS=Mus musculus OX=10090 GN=Sema5b PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF01437 all species →	PSI	Plexin repeat	Family	Interproscan
PF01403 all species →	Sema	Sema domain	Repeat	Interproscan
PF01390 all species →	SEA	SEA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR000082 all species →	Domain	SEA domain	Interproscan
IPR016201 all species →	Domain	PSI domain	Interproscan
IPR027231 all species →	Family	Semaphorin	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036364 all species →	Homologous_superfamily	SEA domain superfamily	Interproscan
IPR001627 all species →	Domain	Sema domain	Interproscan
IPR002165 all species →	Repeat	Plexin repeat	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036352 all species →	Homologous_superfamily	Sema domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11036 all species →	SEMAPHORIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001755 all species →	Biological Process	neural crest cell migration	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030215 all species →	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335 all species →	Biological Process	positive regulation of cell migration	Interproscan
GO:0045499 all species →	Molecular Function	chemorepellent activity	Interproscan
GO:0048843 all species →	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan
GO:0050919 all species →	Biological Process	negative chemotaxis	Interproscan
GO:0071526 all species →	Biological Process	semaphorin-plexin signaling pathway	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g4134.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g4134.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.