Gene detail

Detailed information of g4143.t1 in Montipora capitata

Genomic Location: Sc0000075:300090...307930
NR annotation: XP_029200549.2, inner centromere protein A-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g4143.t1

atgaaacgaaaacggagaaagagcgagtctgaccagagcagtgatgacaatgcaatccatgcagataatggtgtaaaagctcctaaaacccagatacaaggatatgcgtctcctcttgtggtgattaatgagggggagcttcttgatagtggtgttgttaatgaagaaaatagggagaagggtagcaaaaggacaactcgggctcagggtaaacgacaacagcctaagaggggagcaagaaagaaaaatgtttcagttatagaaactccggatgaagaaccaccagactccccctctgtgcctgaattgccaaagaggagtaccagaaattcaagaaaaaagaactcggagatcaatgaagaaaacaagctacctaagaggtttactagaaatacactgaagaaaataatagacggagctgcacaagtttcctctactgaggatttacctgtgcaaccagtgactaagaagaggaggtcaagcgtgcgaccagaaaaagcagaaaattctggagatgtacctgttgtacctttgaaaaaagaaccagtatcaccagctgaagaagtgcaagcactgaggagaagcttactaaattcaacaaaggtggaggagaatgaaactgagaatgtacctatcccacatgttccagaaactcctgatcaatctgtcaattgtgcaacagagaatgttgcatcacccgcagctaacaagatccatagagcagcagttcatctcatcctgcaatcaccaaggcttggcattggaagagacgaaggagtcactgtaggagctactgcagcttcaagtccatgcattaaggaagaaaatgagttgtatcatgcaagaatggaggaaactgcaaaatctgctaaccaggaaaaagctgattgtgatgttgcgtctgttagttcttctactccaaagtttgtccctcctgataaatcaccagaaaaatgcaaattcaaattgaaagagacagaaatagaagaggatgttgatagtgaaggaaaattagataaagttcaaaatgtggcagtcagtgcaactaagtgtgatgaaacggatacaaacaaagatgtcaacaaggaagatatgtgcccccaggtagtgatgtctgatgtagaatcttcaagaagaagcatgcgcagaagcagcggatggagaaggaggagcaagagattaaatcatcaactgtctcctgcaaatagacgactgtctatcaaaaagacagttacaaagtccaagacaccaagcaggaagagtcttgtcaaaagctctgtaaagttgaagctgatgagttcaaaactcatgcctgaattaagacttactggtaccaaacaaagtaggaacgatcaagtcactgcacaagataaagacatggaggatgtgagagtgcggctttttgatgactggacaagtcacagcagtgacagtgcaaattctgctacctgtcatagtagctgtagcagctctgaggacaagggtgaccctccagcagtggagaagcttttcaacgagattgttgaggatgatgttgaagaggtgttccatgattgcttaacagagaatgaaggggaacaactggccaaagaagaacctggagcaaaaacagacagtgccaattcacctgttgtggagaatggcatttcactggggtccatcaatcatgccaatcaaggaagcagtagcaatgatgaattggatcctaccacagggggccctactgaggagctgggaacaccaacacaggaaaagcaagaggctatgaatctagtgcaaaaggttaaaccaagcaacatcgccatggtgcattcatttatacgaagaaatactccaaagaaagttgacccagaagaaaagaagaaacaactccggatcgcattaaaagagaaagaggagaaggaaaaagagaggcgagaacaacttgaaatacagagacaacgggaagtagaagaaaggaaacggaggagagaggaacgagccaagaaagcagcagaacagagagctgcaaaacttcacgaaatagaagagagaaaacggcaggctcacgatcagaggcaagttatcgaggaaaaagcaagaaaactgaaagagaaagaagacgacgacaaaaagaaactacggatgcagaaaagggcggagatagaagcgagaagaaaacaggaagaggctgctaggaaacaacgaagacgagagcaagaagaagaagagaagagacaacgagaggcgctgcagagaaaactggagatggaagaacaagagagacaacgaaaaatagctgaggcaaaacgtcaccaagaacaccgagagagggaattagaaaaggaacgagaattagagaaaaagaggaagcttaaagccattgaagacaaggagaaacggctccgcgagaaagaggagaaggaaaagaaattacgcgaggataaaatgaaaagtgatcgagaaagggaagagagggaacgagccagaattgcacagcttatccgcgagaaagaggaggctgaaagacgcgccagagaacagcgcgtcaaagaagaaaaagaacggcaagaacgcgagaagaggacgaaggaggaaagcaaaacggccggagtgctacgcgaaagtcaaaaggcaaatatcagtgcgtgtgactcgtacgaaatgacaccaccgcccctgaaaatcaaaaaaccagccacccaaaataactacaacattactgacctgaacagcgatgactcaaccgacgatgaagataatccaaaaaagaaaataccagcgtgggctcgtgaaccagcattgacagccaccatcttcaaacaagcgtattcggacatcgacgtgaatagtatttttgaaagagtcccgcctctgattctcgaggaagtctttacgcaaaccaagaagcgttttaatcatcgcacaagctctgccgtttggaactcaccaccattacggaacggaacatacatctaa

Transcript

g4143.t1

ATGAAACGAAAACGGAGAAAGAGCGAGTCTGACCAGAGCAGTGATGACAATGCAATCCATGCAGATAATGGTGTAAAAGCTCCTAAAACCCAGATACAAGGATATGCGTCTCCTCTTGTGGTGATTAATGAGGGGGAGCTTCTTGATAGTGGTGTTGTTAATGAAGAAAATAGGGAGAAGGGTAGCAAAAGGACAACTCGGGCTCAGGGTAAACGACAACAGCCTAAGAGGGGAgcaagaaagaaaaatgtttcAGTTATAGAAACTCCGGATGAAGAACCACCAGACTCCCCCTCTGTGCCTGAATTGCCAAAGAGGAGTACcagaaattcaagaaaaaagaactcgGAGATCAATGAAGAAAACAAGCTACCTAAGAGGTTTACTAGAAATACACTGAAGAAAATAATAGACGGAGCTGCACAAGTTTCCTCTACTGAGGATTTACCTGTGCAACCAGTGACTAAGAAGAGGAGGTCAAGCGTGCGACCAGAAAAAGCAGAAAATTCTGGAGATGTACCTGTTGTACCTTTGAAAAAAGAACCAGTATCACCAGCTGAAGAAGTGCAAGCACTGAGGAGAAGCTTACTAAATTCAACAAAGGTGGAGGAGAATGAAACTGAGAATGTACCTATCCCACATGTTCCAGAAACTCCTGATCAATCTGTCAATTGTGCAACAGAGAATGTTGCATCACCCGCAGCTAACAAGATCCATAGAGCAGCAGTTCATCTCATCCTGCAATCACCAAGGCTTGGCATTGGAAGAGACGAAGGAGTCACTGTAGGAGCTACTGCAGCTTCAAGTCCATGCATTAAGGAAGAAAATGAGTTGTATCATGCAAGAATGGAGGAAACTGCAAAATCTGCTAACCAGGAAAAAGCTGATTGTGATGTTGCGTCTGTTAGTTCTTCTACTCCAAAGTTTGTCCCTCCTGATAAATCACCagaaaaatgcaaattcaaATTGAAAGAGACAGAAATAGAAGAGGATGTTGATAGTGAAGGAAAATTAGATAAAGTTCAAAATGTGGCAGTCAGTGCAACTAAGTGTGATGAAACGGATACAAACAAAGATGTCAACAAGGAAGATATGTGCCCCCAGGTAGTGATGTCTGATGTAGAATCTTCAAGAAGAAGCATGCGCAGAAGCAGCGGATGGAGAAGGAGGAGCAAGAGATTAAATCATCAACTGTCTCCTGCAAATAGACGACTGTCTATCAAAAAGACAGTTACAAAGTCCAAGACACCAAGCAGGAAGAGTCTTGTCAAAAGCTCTGTAAAGTTGAAGCTGATGAGTTCAAAACTCATGCCTGAATTAAGACTTACTGGTACCAAACAAAGTAGGAACGATCAAGTCACTGCACAAGATAAAGACATGGAGGATGTGAGAGTGCGGCTTTTTGATGACTGGACAAGTCACAGCAGTGACAGTGCAAATTCTGCTACCTGTCATAGTAGCTGTAGCAGCTCTGAGGACAAGGGTGACCCTCCAGCAGTGGAGAAGCTTTTCAACGAGATTGTtgaggatgatgttgaagaGGTGTTCCATGATTGCTTAACAGAGAATGAAGGGGAACAACTGGCCAAAGAAGAACCTGGAGCAAAAACAGACAGTGCCAATTCACCTGTTGTGGAGAATGGCATTTCACTGGGGTCCATCAATCATGCCAATCAAGGAAGCAGTAGCAATGATGAATTGGATCCTACCACAGGGGGCCCTACTGAGGAGCTGGGAACACCAACACAGGAAAAGCAAGAGGCTATGAATCTAGTGCAAAAGGTTAAACCAAGCAACATCGCCATGGTGCATTCATTTATACGAAGAAATACTCCAAAGAAAGTTGACCCAGAAGAAAAGAAGAAACAACTCCGGATCGCATTAAAAGAGAAAGAGGAGAAGGAAAAAGAGAGGCGAGAACAACTTGAAATACAGAGACAACGGGAAGTAGAAGAAAGGAAACGGAGGAGAGAGGAACGAGCCAAGAAAGCAGCAGAACAGAGAGCTGCAAAACTTCACGAAATAGAAGAGAGAAAACGGCAGGCTCACGATCAGAGGCAAGTTATCgaggaaaaagcaagaaaactGAAAGAGAAAGAAGACGACGACAAAAAGAAACTACGGATGCAGAAAAGGGCGGAGATAGAAGCGAGAAGAAAACAGGAAGAGGCTGCTAGGAAACAACGAAGACGAgagcaagaagaagaagagaagagaCAACGAGAGGCGCTGCAGAGAAAACTGGAGATGGAAGAACAAGAGAGACAACGAAAAATAGCTGAGGCAAAACGTCACCAAGAACACCGAGAGAGGGAATTAGAAAAGGAACGAGAATTAGAGAAAAAGAGGAAGCTTAAAGCCATTGAAGACAAGGAGAAACGGCTCCGCGAGAAAGAGGAGAAGGAAAAGAAATTACGCGAGGATAAAATGAAAAGTGATCGAGAAAGGGAAGAGAGGGAACGAGCCAGAATTGCACAGCTTATCCGCGAGAAAGAGGAGGCTGAAAGACGCGCCAGAGAACAGCGCgtcaaagaagaaaaagaacggCAAGAACGCGAGAAGAGGACGAAGGAGGAAAGCAAAACGGCCGGAGTGCTACGCGAAAGTCAAAAGGCAAATATCAGTGCGTGTGACTCGTACGAAATGACACCACCGCCCCTGAAAATCAAAAAACCAGCCACCCAAAATAACTACAACATTACTGACCTGAACAGCGATGACTCAACCGACGATGAAGAtaatccaaaaaagaaaataccagCGTGGGCTCGTGAACCAGCATTGACAGCCACCATCTTCAAACAAGCGTATTCGGACATCGACGTGAATAGTATTTTTGAAAGAGTCCCGCCTCTGATTCTCGAGGAAGTCTTTACGCAAACCAAGAAGCGTTTTAATCATCGCACAAGCTCTGCCGTTTGGAACTCACCACCATTACGGAACGGAACATACATCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O13024	Inner centromere protein A OS=Xenopus laevis OX=8355 GN=incenp-a PE=1 SV=1
P53352	Inner centromere protein OS=Gallus gallus OX=9031 GN=INCENP PE=1 SV=1
Q32N93	Inner centromere protein B OS=Xenopus laevis OX=8355 GN=incenp-b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006759 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03941 all species →	INCENP_ARK-bind	Inner centromere protein, ARK binding region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005635 all species →	Domain	Inner centromere protein, ARK-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13142 all species →	INNER CENTROMERE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000281 all species →	Biological Process	mitotic cytokinesis	Interproscan
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0030496 all species →	Cellular Component	midbody	Interproscan
GO:0032133 all species →	Cellular Component	chromosome passenger complex	Interproscan
GO:0051257 all species →	Biological Process	meiotic spindle midzone assembly	Interproscan
GO:0051310 all species →	Biological Process	metaphase chromosome alignment	Interproscan
GO:1990385 all species →	Cellular Component	meiotic spindle midzone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g4143.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g4143.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

322.7Max TPM

156.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	158.23	309.09
whole organisms · low pH treatment	15	15	162.70	322.75
whole organisms · extra low pH treatment pH treatment	12	12	144.94	303.12

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	309.09
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	303.32
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	294.78
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	285.51
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	231.73
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	231.71
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	215.70
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	214.21
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	203.38
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	180.48
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	178.38
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	158.03
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	142.63
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	93.99
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	68.96
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	67.93
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	53.43
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	52.85
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	13.74
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	11.88
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	11.14
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	322.75
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	296.49
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	281.81
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	272.54
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	251.71
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	241.12
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	194.66
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	186.01
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	158.15
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	72.81
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	55.42
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	53.48
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	20.20
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	17.34
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	16.05
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	303.12
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	277.38
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	243.86
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	194.01
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	181.59
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	171.01
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	159.55
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	78.18
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	66.63
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	24.43
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	20.52
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	19.02

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.