Gene detail

Detailed information of g4161.t2 in Acropora digitifera

Genomic Location: chr2Alt:22654558...22667535
NR annotation: XP_029208412.1, putative acyl-coenzyme A oxidase 3.2, peroxisomal [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g4161.t2

ATGTTTTCTGCAGGGAGACGATTACAATCGGCCGTTTCTAAAGTTAGATTTCAACTATCTGTTTTGCACTCGCGGAGCGGATTATCTCATACTTTCCCAGGCGATGTGATTCATTCACGGAGCTTACCATTGCGCAACACTCGTCCCCTTTCAAGTTCACAAGTGCGAATGGACGTACAGAAACTTAGAGAAGAGTGGGGGAAACCATCATTTGATGTTTTGCAAATGACACACCTGCTTGATCATGACAATCATGACAAGAGAGCTCAATTTCGTAAAATTCTATCCGAGGATCCTCTAATGACACCGAAGTACAACATTTCTCTGGACGAAGAGAGGGAGTTGGCGTTGCAAAGACTAAAGAAACTTTGTGACCAGGGATTCATTTCGGTGCTAGACTTCAAGAATAACCCTTTATGGATTTTCGCCGCTCATGAACTTGTTTCTGTTGTTGATGCGGCAATGGCAACAAAGATGACTGTTCAGTTCAACCTTTTTGGTGGTACTGTTTTGAAATTGGGAACGGAAAGACACCATGAAAGGTTTTTAAAGGGTATTGATACACTTGATGATGTGGGATGCTTTGGGCTCACAGAACTTGGTTATGGAAACAATGCAGTGCAGATGGAAACAACAGCTACATATGACAAATCAACAAAGGAATTTATTGTCCATACTCCTAACCCCATGGCACAGAAATACTGGATCACAAATGGGGCCTGCCACGCCCACCATATTATAGTCTTTTCCCAACTTTACATTGATGGAGTCAATCAAGGTATTCATGGTATTCTTGTGCCTATTCGAGACAAGAACCTGAAGGTCGTGCCAGGAGTTGAGATTCATGATATGGGACACAAGATGGGTCTCAATGGAGTGGATAATGCCAAATTTTTTTTCAAAAATGTTCGTGTGCCACGAGAGAATCTGCTGAACCTTTATTCTGATGTTGCTGAGGATGGAACATACACCACAACTGTTGAAGGAAGCATCAGAAAGCGTTTCCTGACTGTTGCTGACCAACTTCTGTCTGGTCGGCTCTGTATTGCCAGTATGTCTCAAGGTGCAGCGAAAGCCTGCATTGCCATTGCCATCCGTTATTCAGCTACTCGTCTGACTGTGGGTCCTGATGGAAAATCTGACACTCCCATTCTCAAATACCAACTCCAACAGAATGCGTTGATGCCTCTATTGGCAACCACATATGCAATAGACTTTGCTATGCATTATGTTAAGGATCACTGGGCATTTCAGGCAAGTGATGGTTCTGAACACGCCGATGTGGTAACCATGTGCTGTGTTATCAAGGCCATCTCTGGTTGGCACGTAGCGGAGACGGCTGCACTTTGTCGTGAGAGATGTGGAGGGCAAGGCTACCTTTCATGTAACAGATTTGGCGGTGGTATTGCTGGTTCCCACTCCTCCATGACAGCTGAAGGGGATAACGCCGTTTTAATGCAAAAAGTTGCAACCGAGAGGTTAATGGTTCTCAAGCCAACACTGCTAGAAGTTGCCGCAACGTACATACCAAGCTTTGTGAGTCGTATGTTTAGCTTGGCGAACCTGACCAATCAAAATTACCTTCAGTCTCTAATCGAGTCACGAGAAAAGGATCTCTTTTTGCAGTTGGGTTTAAAAATGATGAAAGCAGGAAAGAAGGGAAGGTTTGAAATGTGGATGTACAAAGAGCAAGACCTAGTCCAAGCAGCATCGCGGGCGTATGGTGAGCGTCTCATAAGTGAGTGCTTCGGTAATAGCATTGATACAGCTGACCCAGGATTAAAGTCAGTGTTAAAGAAACTTCATCATCTTTATCAAATGAATGTCATTAAAAGAGATCTGGCTTACTTCACAACTTCTGGGCTTATGTCCACGTCAACTGGTGCACAAGTTGGAAAGGCTCATGCTGACCTTTGTCGAGAGGTAGCACCAGAGGCTTTGGCACTCTGCGACGCGTTTGGAATTTCGGAGGAATTGCTTAGTGCTCCAATTGCAAGAGACTGGATCAAGTATAACTCCATTGACAACAAAGGAGAAGTCTGTGGTTTGGAGTTTTAA

Transcript

chr2Alt.g4161.t2

ACACACACATACACCGAGCTGTGGCACCCACTTGGTGTCAAAAAGGTAGAAGCACAACGTACACTACGATGACAAACATTTGAAACAAACGCATAGTTTGAAGTTTGTTTCAAAGTTGTTCTCCTCATGTTTTCTGCAGGGAGACGATTACAATCGGCCGTTTCTAAAGTTAGATTTCAACTATCTGTTTTGCACTCGCGGAGCGGATTATCTCATACTTTCCCAGGCGATGTGATTCATTCACGGAGCTTACCATTGCGCAACACTCGTCCCCTTTCAAGTTCACAAGTGCGAATGGACGTACAGAAACTTAGAGAAGAGTGGGGGAAACCATCATTTGATGTTTTGCAAATGACACACCTGCTTGATCATGACAATCATGACAAGAGAGCTCAATTTCGTAAAATTCTATCCGAGGATCCTCTAATGACACCGAAGTACAACATTTCTCTGGACGAAGAGAGGGAGTTGGCGTTGCAAAGACTAAAGAAACTTTGTGACCAGGGATTCATTTCGGTGCTAGACTTCAAGAATAACCCTTTATGGATTTTCGCCGCTCATGAACTTGTTTCTGTTGTTGATGCGGCAATGGCAACAAAGATGACTGTTCAGTTCAACCTTTTTGGTGGTACTGTTTTGAAATTGGGAACGGAAAGACACCATGAAAGGTTTTTAAAGGGTATTGATACACTTGATGATGTGGGATGCTTTGGGCTCACAGAACTTGGTTATGGAAACAATGCAGTGCAGATGGAAACAACAGCTACATATGACAAATCAACAAAGGAATTTATTGTCCATACTCCTAACCCCATGGCACAGAAATACTGGATCACAAATGGGGCCTGCCACGCCCACCATATTATAGTCTTTTCCCAACTTTACATTGATGGAGTCAATCAAGGTATTCATGGTATTCTTGTGCCTATTCGAGACAAGAACCTGAAGGTCGTGCCAGGAGTTGAGATTCATGATATGGGACACAAGATGGGTCTCAATGGAGTGGATAATGCCAAATTTTTTTTCAAAAATGTTCGTGTGCCACGAGAGAATCTGCTGAACCTTTATTCTGATGTTGCTGAGGATGGAACATACACCACAACTGTTGAAGGAAGCATCAGAAAGCGTTTCCTGACTGTTGCTGACCAACTTCTGTCTGGTCGGCTCTGTATTGCCAGTATGTCTCAAGGTGCAGCGAAAGCCTGCATTGCCATTGCCATCCGTTATTCAGCTACTCGTCTGACTGTGGGTCCTGATGGAAAATCTGACACTCCCATTCTCAAATACCAACTCCAACAGAATGCGTTGATGCCTCTATTGGCAACCACATATGCAATAGACTTTGCTATGCATTATGTTAAGGATCACTGGGCATTTCAGGCAAGTGATGGTTCTGAACACGCCGATGTGGTAACCATGTGCTGTGTTATCAAGGCCATCTCTGGTTGGCACGTAGCGGAGACGGCTGCACTTTGTCGTGAGAGATGTGGAGGGCAAGGCTACCTTTCATGTAACAGATTTGGCGGTGGTATTGCTGGTTCCCACTCCTCCATGACAGCTGAAGGGGATAACGCCGTTTTAATGCAAAAAGTTGCAACCGAGAGGTTAATGGTTCTCAAGCCAACACTGCTAGAAGTTGCCGCAACGTACATACCAAGCTTTGTGAGTCGTATGTTTAGCTTGGCGAACCTGACCAATCAAAATTACCTTCAGTCTCTAATCGAGTCACGAGAAAAGGATCTCTTTTTGCAGTTGGGTTTAAAAATGATGAAAGCAGGAAAGAAGGGAAGGTTTGAAATGTGGATGTACAAAGAGCAAGACCTAGTCCAAGCAGCATCGCGGGCGTATGGTGAGCGTCTCATAAGTGAGTGCTTCGGTAATAGCATTGATACAGCTGACCCAGGATTAAAGTCAGTGTTAAAGAAACTTCATCATCTTTATCAAATGAATGTCATTAAAAGAGATCTGGCTTACTTCACAACTTCTGGGCTTATGTCCACGTCAACTGGTGCACAAGTTGGAAAGGCTCATGCTGACCTTTGTCGAGAGGTAGCACCAGAGGCTTTGGCACTCTGCGACGCGTTTGGAATTTCGGAGGAATTGCTTAGTGCTCCAATTGCAAGAGACTGGATCAAGTATAACTCCATTGACAACAAAGGAGAAGTCTGTGGTTTGGAGTTTTAAATGGACATTTTGTGGCGTAAACGCTATTTTGTTGGTTCATCTTGTTTCAAGCTATCAAATGAACGATTTTGAGTATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9LMI7	Putative acyl-coenzyme A oxidase 3.2, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=ACX3.2 PE=3 SV=1
O65201	Acyl-coenzyme A oxidase 2, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=ACX2 PE=1 SV=2
O64894	Acyl-coenzyme A oxidase, peroxisomal OS=Cucurbita maxima OX=3661 GN=Acx PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02770 all species →	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF00441 all species →	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF01756 all species →	ACOX	Acyl-CoA oxidase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006091 all species →	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR046373 all species →	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR009075 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR012258 all species →	Family	Acyl-CoA oxidase	Interproscan
IPR002655 all species →	Domain	Acyl-CoA oxidase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10909 all species →	ELECTRON TRANSPORT OXIDOREDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0003997 all species →	Molecular Function	acyl-CoA oxidase activity	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan
GO:0006635 all species →	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0005504 all species →	Molecular Function	fatty acid binding	Interproscan
GO:0033540 all species →	Biological Process	fatty acid beta-oxidation using acyl-CoA oxidase	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0055088 all species →	Biological Process	lipid homeostasis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00232	E1.3.3.6, ACOX1, ACOX3; acyl-CoA oxidase	EC:1.3.3.6	Alcoholic liver disease	ko04936	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g4161.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.