Detailed information of g42.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_259781575.1, cobaltochelatase subunit CobN [Aestuariispira ectoiniformans]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P29929Aerobic cobaltochelatase subunit CobN OS=Sinorhizobium sp. OX=42445 GN=cobN PE=1 SV=1
Q9HZQ3Aerobic cobaltochelatase subunit CobN OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=cobN PE=3 SV=1
Q58318Uncharacterized protein MJ0908 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0908 PE=3 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|PHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02514CobN-Mg_chelCobN/Magnesium ChelataseFamilyInterproscan
PF00628PHDPHD-fingerDomainInterproscan
PF05380Peptidase_A17Pao retrotransposon peptidase FamilyInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003672FamilyCobN/magnesium chelataseInterproscan
IPR011953FamilyCobaltochelatase, CobN subunitInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR038028FamilyNucleosome-remodeling factor subunit BPTFInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR008042FamilyRetrotransposon, PaoInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR024862FamilyTransient receptor potential cation channel subfamily VInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44119MAGNESIUM-CHELATASE SUBUNIT CHLH, CHLOROPLASTICInterproscan
PTHR47236GENE, 32742-RELATED-RELATEDInterproscan
PTHR45975NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTFInterproscan
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR10582TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0009058Biological Processbiosynthetic processInterproscan
GO:0009236Biological Processcobalamin biosynthetic processInterproscan
GO:0051116Molecular Functioncobaltochelatase activityInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016589Cellular ComponentNURF complexInterproscan
GO:0035064Molecular Functionmethylated histone bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0005262Molecular Functioncalcium channel activityInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0098703Biological Processcalcium ion import across plasma membraneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02230cobN; cobaltochelatase CobNEC:6.6.1.2
Porphyrin metabolismko00860deepkoala

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