Gene detail

Detailed information of g421.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAH3152985.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q52KN9	Pre-mRNA-splicing factor CWC22 homolog OS=Xenopus laevis OX=8355 GN=cwc22 PE=2 SV=1
Q9HCG8	Pre-mRNA-splicing factor CWC22 homolog OS=Homo sapiens OX=9606 GN=CWC22 PE=1 SV=3
Q8C5N3	Pre-mRNA-splicing factor CWC22 homolog OS=Mus musculus OX=10090 GN=Cwc22 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000554 (this species only)
Orthogroup (gene family)	OG0002657 (this species only)
Orthogroup (gene family)	OG0002984 (this species only)
Orthogroup (gene family)	OG0004198 (this species only)
Orthogroup (gene family)	OG0005738 (this species only)
Orthogroup (gene family)	OG0008770 (this species only)
Orthogroup (gene family)	OG0010008 (this species only)
Orthogroup (gene family)	OG0013719 (this species only)
Orthogroup (gene family)	OG0019890 (this species only)
Orthogroup (gene family)	OG0023243 (this species only)
Orthogroup (gene family)	OG0059518 (this species only)
Orthogroup (gene family)	OG0059593 (this species only)
Orthogroup (gene family)	OG0171898 (this species only)
Orthogroup (gene family)	OG0173746 (this species only)
Orthogroup (gene family)	OG0174485 (this species only)
Transcription factor family	bHLH · all TF in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|Cullin · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02847 all species →	MA3	MA3 domain	Repeat	Interproscan
PF19026 all species →	HYPK_UBA	HYPK UBA domain	Domain	Interproscan
PF03471 all species →	CorC_HlyC	Transporter associated domain	Domain	Interproscan
PF00571 all species →	CBS	CBS domain	Domain	Interproscan
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF06470 all species →	SMC_hinge	SMC proteins Flexible Hinge Domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003891 all species →	Domain	Initiation factor eIF-4 gamma, MA3	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR050781 all species →	Family	Pre-mRNA-splicing factor CWC22	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR044034 all species →	Domain	Nascent polypeptide-associated complex subunit alpha-like, UBA domain	Interproscan
IPR052617 all species →	Family	Huntingtin-interacting protein K	Interproscan
IPR038922 all species →	Domain	Huntingtin-interacting protein K, UBA-like domain	Interproscan
IPR000644 all species →	Domain	CBS domain	Interproscan
IPR016169 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 2	Interproscan
IPR005170 all species →	Domain	Transporter-associated domain	Interproscan
IPR044751 all species →	Domain	Ion transporter-like, CBS domain	Interproscan
IPR046342 all species →	Homologous_superfamily	CBS domain superfamily	Interproscan
IPR036318 all species →	Homologous_superfamily	FAD-binding, type PCMH-like superfamily	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR016159 all species →	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR037830 all species →	Family	ZZ-type zinc finger-containing protein 3	Interproscan
IPR036277 all species →	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan
IPR010935 all species →	Domain	SMCs flexible hinge	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18034 all species →	CELL CYCLE CONTROL PROTEIN CWF22-RELATED	Interproscan
PTHR19991 all species →	L 2 01289	Interproscan
PTHR31184 all species →	HUNTINGTIN-INTERACTING PROTEIN K FAMILY MEMBER	Interproscan
PTHR22777 all species →	HEMOLYSIN-RELATED	Interproscan
PTHR11969 all species →	MAX DIMERIZATION, MAD	Interproscan
PTHR22705 all species →	ZINC FINGER, ZZ DOMAIN CONTAINING 3	Interproscan
PTHR18937 all species →	STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0043066 all species →	Biological Process	negative regulation of apoptotic process	Interproscan
GO:0050821 all species →	Biological Process	protein stabilization	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0051276 all species →	Biological Process	chromosome organization	Interproscan
GO:0000799 all species →	Cellular Component	condensin complex	Interproscan
GO:0007076 all species →	Biological Process	mitotic chromosome condensation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02895	RP-L24, MRPL24, rplX; large subunit ribosomal protein L24	-	Ribosome	ko03011	deepkoala
K13100	CWC22; pre-mRNA-splicing factor CWC22	-	Spliceosome	ko03041	deepkoala
K15729	PTGES; microsomal prostaglandin-E synthase 1	EC:5.3.99.3	Arachidonic acid metabolism	ko00590	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.