Gene detail

Detailed information of g421.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAH3152985.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q52KN9	Pre-mRNA-splicing factor CWC22 homolog OS=Xenopus laevis OX=8355 GN=cwc22 PE=2 SV=1
Q9HCG8	Pre-mRNA-splicing factor CWC22 homolog OS=Homo sapiens OX=9606 GN=CWC22 PE=1 SV=3
Q8C5N3	Pre-mRNA-splicing factor CWC22 homolog OS=Mus musculus OX=10090 GN=Cwc22 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	bHLH
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|Cullin

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02847	MA3	MA3 domain	Repeat	Interproscan
PF19026	HYPK_UBA	HYPK UBA domain	Domain	Interproscan
PF03471	CorC_HlyC	Transporter associated domain	Domain	Interproscan
PF00571	CBS	CBS domain	Domain	Interproscan
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF00569	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF06470	SMC_hinge	SMC proteins Flexible Hinge Domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003891	Domain	Initiation factor eIF-4 gamma, MA3	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR050781	Family	Pre-mRNA-splicing factor CWC22	Interproscan
IPR036249	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR044034	Domain	Nascent polypeptide-associated complex subunit alpha-like, UBA domain	Interproscan
IPR052617	Family	Huntingtin-interacting protein K	Interproscan
IPR038922	Domain	Huntingtin-interacting protein K, UBA-like domain	Interproscan
IPR000644	Domain	CBS domain	Interproscan
IPR016169	Homologous_superfamily	FAD-binding, type PCMH, subdomain 2	Interproscan
IPR005170	Domain	Transporter-associated domain	Interproscan
IPR044751	Domain	Ion transporter-like, CBS domain	Interproscan
IPR046342	Homologous_superfamily	CBS domain superfamily	Interproscan
IPR036318	Homologous_superfamily	FAD-binding, type PCMH-like superfamily	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR016159	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan
IPR043145	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan
IPR000433	Domain	Zinc finger, ZZ-type	Interproscan
IPR037830	Family	ZZ-type zinc finger-containing protein 3	Interproscan
IPR036277	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan
IPR010935	Domain	SMCs flexible hinge	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18034	CELL CYCLE CONTROL PROTEIN CWF22-RELATED	Interproscan
PTHR19991	L 2 01289	Interproscan
PTHR31184	HUNTINGTIN-INTERACTING PROTEIN K FAMILY MEMBER	Interproscan
PTHR22777	HEMOLYSIN-RELATED	Interproscan
PTHR11969	MAX DIMERIZATION, MAD	Interproscan
PTHR22705	ZINC FINGER, ZZ DOMAIN CONTAINING 3	Interproscan
PTHR18937	STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0043066	Biological Process	negative regulation of apoptotic process	Interproscan
GO:0050821	Biological Process	protein stabilization	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0051276	Biological Process	chromosome organization	Interproscan
GO:0000799	Cellular Component	condensin complex	Interproscan
GO:0007076	Biological Process	mitotic chromosome condensation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02895	RP-L24, MRPL24, rplX; large subunit ribosomal protein L24	-	Spliceosome	ko03041	deepkoala
			Arachidonic acid metabolism	ko00590	deepkoala
			Ribosome	ko03011	deepkoala