Gene detail

Detailed information of g431.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_032217927.1, ATP-dependent RNA helicase DDX54 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q8K4L0	ATP-dependent RNA helicase DDX54 OS=Mus musculus OX=10090 GN=Ddx54 PE=1 SV=1
Q8TDD1	ATP-dependent RNA helicase DDX54 OS=Homo sapiens OX=9606 GN=DDX54 PE=1 SV=2
O49289	Putative DEAD-box ATP-dependent RNA helicase 29 OS=Arabidopsis thaliana OX=3702 GN=RH29 PE=3 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-C2H2
Transcription Factors Family	zf-BED

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01981	PTH2	Peptidyl-tRNA hydrolase PTH2	Family	Interproscan
PF08147	DBP10CT	DBP10CT (NUC160) domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF15711	ILEI	Interleukin-like EMT inducer	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF07571	TAF6_C	TAF6 C-terminal HEAT repeat domain	Repeat	Interproscan
PF02969	TAF	TATA box binding protein associated factor (TAF)	Domain	Interproscan
PF06747	CHCH	CHCH domain	Domain	Interproscan
PF13650	Asp_protease_2	Aspartyl protease	Domain	Interproscan
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036939	Homologous_superfamily	Copper type II, ascorbate-dependent monooxygenase, N-terminal domain superfamily	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR042237	Family	Putative peptidyl-tRNA hydrolase PTRHD1	Interproscan
IPR023476	Homologous_superfamily	Peptidyl-tRNA hydrolase II domain superfamily	Interproscan
IPR002833	Family	Peptidyl-tRNA hydrolase, PTH2	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR012541	Domain	DBP10, C-terminal	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR003609	Domain	PAN/Apple domain	Interproscan
IPR033517	Domain	DDX54/DBP10 family, DEAD-box helicase domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR039477	Domain	ILEI/PANDER domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR011442	Domain	TAF6, C-terminal HEAT repeat domain	Interproscan
IPR037796	Family	Transcription initiation factor TFIID subunit 6	Interproscan
IPR046344	Homologous_superfamily	TAF6, C-terminal HEAT repeat domain superfamily	Interproscan
IPR004823	Domain	TATA box binding protein associated factor (TAF), histone-like fold domain	Interproscan
IPR009072	Homologous_superfamily	Histone-fold	Interproscan
IPR010625	Domain	CHCH	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR051061	Family	Zinc finger transcriptional regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR46194	PEPTIDYL-TRNA HYDROLASE PTRHD1-RELATED	Interproscan
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan
PTHR10221	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	Interproscan
PTHR13523	COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77	Interproscan
PTHR46179	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004497	Molecular Function	monooxygenase activity	Interproscan
GO:0005507	Molecular Function	copper ion binding	Interproscan
GO:0016715	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen	Interproscan
GO:0004045	Molecular Function	aminoacyl-tRNA hydrolase activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0000124	Cellular Component	SAGA complex	Interproscan
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0046695	Cellular Component	SLIK (SAGA-like) complex	Interproscan
GO:0051123	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan
GO:0046982	Molecular Function	protein heterodimerization activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0007005	Biological Process	mitochondrion organization	Interproscan
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01809	manA, MPI; mannose-6-phosphate isomerase	EC:5.3.1.8	Ribosome biogenesis	ko03009	deepkoala
			Ribosome biogenesis	ko03009	deepkoala
			Chromosome and associated proteins	ko03036	deepkoala
			O-Antigen nucleotide sugar biosynthesis	ko00541	deepkoala