Gene detail

Detailed information of g432.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_028412052.1, uncharacterized protein LOC114534781 [Dendronephthya gigantea]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P34642	Signal recognition particle 9 kDa protein OS=Caenorhabditis elegans OX=6239 GN=ZK512.4 PE=3 SV=1
Q9SMU7	Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP9 PE=3 SV=1
Q4R6I6	Signal recognition particle 9 kDa protein OS=Macaca fascicularis OX=9541 GN=SRP9 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000042 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000126 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000574 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000859 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001382 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008043 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0009031 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0010407 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0018306 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0042444 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07687 all species →	M20_dimer	Peptidase dimerisation domain	Domain	Interproscan
PF01546 all species →	Peptidase_M20	Peptidase family M20/M25/M40	Family	Interproscan
PF01722 all species →	BolA	BolA-like protein	Family	Interproscan
PF05486 all species →	SRP9-21	Signal recognition particle 9 kDa protein (SRP9)	Domain	Interproscan
PF15711 all species →	ILEI	Interleukin-like EMT inducer	Domain	Interproscan
PF07727 all species →	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043596 all species →	Family	CFAP53/TCHP	Interproscan
IPR042098 all species →	Homologous_superfamily	Taurine dioxygenase TauD-like superfamily	Interproscan
IPR050411 all species →	Family	Alpha-ketoglutarate-dependent hydroxylases	Interproscan
IPR011650 all species →	Domain	Peptidase M20, dimerisation domain	Interproscan
IPR017144 all species →	Family	Xaa-Arg dipeptidase	Interproscan
IPR052030 all species →	Family	Peptidase M20/M20A family hydrolases	Interproscan
IPR002933 all species →	Family	Peptidase M20	Interproscan
IPR017439 all species →	Family	Amidohydrolase	Interproscan
IPR036264 all species →	Homologous_superfamily	Bacterial exopeptidase dimerisation domain	Interproscan
IPR002634 all species →	Family	BolA protein	Interproscan
IPR036065 all species →	Homologous_superfamily	BolA-like superfamily	Interproscan
IPR045115 all species →	Family	BolA-like protein 2	Interproscan
IPR009018 all species →	Homologous_superfamily	Signal recognition particle, SRP9/SRP14 subunit	Interproscan
IPR039914 all species →	Family	Signal recognition particle SRP9-like	Interproscan
IPR008832 all species →	Family	Signal recognition particle SRP9	Interproscan
IPR039432 all species →	Domain	SRP9 domain	Interproscan
IPR039477 all species →	Domain	ILEI/PANDER domain	Interproscan
IPR013103 all species →	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31183 all species →	TRICHOPLEIN KERATIN FILAMENT-BINDING PROTEIN FAMILY MEMBER	Interproscan
PTHR47018 all species →	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR10696 all species →	GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED	Interproscan
PTHR30575 all species →	PEPTIDASE M20	Interproscan
PTHR47160 all species →	PUTATIVE-RELATED	Interproscan
PTHR12735 all species →	BOLA-LIKE PROTEIN-RELATED	Interproscan
PTHR12834 all species →	SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN	Interproscan
PTHR42648 all species →	TRANSPOSASE, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016805 all species →	Molecular Function	dipeptidase activity	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006879 all species →	Biological Process	intracellular iron ion homeostasis	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0097428 all species →	Biological Process	protein maturation by iron-sulfur cluster transfer	Interproscan
GO:0006614 all species →	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0008312 all species →	Molecular Function	7S RNA binding	Interproscan
GO:0048500 all species →	Cellular Component	signal recognition particle	Interproscan
GO:0005786 all species →	Cellular Component	signal recognition particle, endoplasmic reticulum targeting	Interproscan
GO:0045900 all species →	Biological Process	negative regulation of translational elongation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03109	SRP9; signal recognition particle subunit SRP9	-	Secretion system	ko02044	deepkoala
K13993	HSP20; HSP20 family protein	-	Chaperones and folding catalysts	ko03110	deepkoala
K26141	PM20D2; Xaa-Arg dipeptidase	EC:3.4.13.4	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →