Gene detail

Detailed information of g433.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: AWO67322.1, GPCR16 [Clytia hemisphaerica]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O57422	Melanopsin-B OS=Xenopus laevis OX=8355 GN=opn4b PE=2 SV=1
Q91559	5-hydroxytryptamine receptor 7 OS=Xenopus laevis OX=8355 GN=htr7 PE=2 SV=1
P28286	5-hydroxytryptamine receptor 2B OS=Drosophila melanogaster OX=7227 GN=5-HT1B PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000042 (this species only)
Orthogroup (gene family)	OG0000352 (this species only)
Orthogroup (gene family)	OG0000572 (this species only)
Orthogroup (gene family)	OG0000714 (this species only)
Orthogroup (gene family)	OG0000903 (this species only)
Orthogroup (gene family)	OG0003271 (this species only)
Orthogroup (gene family)	OG0006526 (this species only)
Orthogroup (gene family)	OG0007864 (this species only)
Orthogroup (gene family)	OG0009525 (this species only)
Orthogroup (gene family)	OG0031759 (this species only)
Orthogroup (gene family)	OG0041200 (this species only)
Orthogroup (gene family)	OG0048368 (this species only)
Orthogroup (gene family)	OG0080406 (this species only)
Orthogroup (gene family)	OG0171023 (this species only)
Orthogroup (gene family)	OG0171734 (this species only)
Transcription factor family	Homeobox · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07834 all species →	RanGAP1_C	RanGAP1 C-terminal domain	Domain	Interproscan
PF16878 all species →	SIX1_SD	Transcriptional regulator, SIX1, N-terminal SD domain	Domain	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF05994 all species →	FragX_IP	Cytoplasmic Fragile-X interacting family	Family	Interproscan
PF01392 all species →	Fz	Fz domain	Domain	Interproscan
PF01534 all species →	Frizzled	Frizzled/Smoothened family membrane region	Family	Interproscan
PF00884 all species →	Sulfatase	Sulfatase	Family	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF07885 all species →	Ion_trans_2	Ion channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036720 all species →	Homologous_superfamily	Ran-GTPase activating protein 1, C-terminal domain superfamily	Interproscan
IPR009109 all species →	Domain	Ran-GTPase activating protein 1, C-terminal	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR031701 all species →	Domain	Homeobox protein SIX1, N-terminal SD domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR008081 all species →	Family	Cytoplasmic FMR1-interacting	Interproscan
IPR015526 all species →	Family	Frizzled/secreted frizzled-related protein	Interproscan
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR000539 all species →	Domain	Frizzled/Smoothened, 7TM	Interproscan
IPR017850 all species →	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR000917 all species →	Domain	Sulfatase, N-terminal	Interproscan
IPR050738 all species →	Family	Sulfatase enzyme	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR042098 all species →	Homologous_superfamily	Taurine dioxygenase TauD-like superfamily	Interproscan
IPR013099 all species →	Domain	Potassium channel domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10390 all species →	HOMEOBOX PROTEIN SIX	Interproscan
PTHR12195 all species →	CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED	Interproscan
PTHR11309 all species →	FRIZZLED	Interproscan
PTHR42693 all species →	ARYLSULFATASE FAMILY MEMBER	Interproscan
PTHR24248 all species →	ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR	Interproscan
PTHR24241 all species →	NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030833 all species →	Biological Process	regulation of actin filament polymerization	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0000340 all species →	Molecular Function	RNA 7-methylguanosine cap binding	Interproscan
GO:0000902 all species →	Biological Process	cell morphogenesis	Interproscan
GO:0006417 all species →	Biological Process	regulation of translation	Interproscan
GO:0031209 all species →	Cellular Component	SCAR complex	Interproscan
GO:0005113 all species →	Molecular Function	patched binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0007224 all species →	Biological Process	smoothened signaling pathway	Interproscan
GO:0007389 all species →	Biological Process	pattern specification process	Interproscan
GO:0007417 all species →	Biological Process	central nervous system development	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0030425 all species →	Cellular Component	dendrite	Interproscan
GO:0071679 all species →	Biological Process	commissural neuron axon guidance	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004065 all species →	Molecular Function	arylsulfatase activity	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0032870 all species →	Biological Process	cellular response to hormone stimulus	Interproscan
GO:0042277 all species →	Molecular Function	peptide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15614	SIX1; homeobox protein SIX1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.