Gene detail

Detailed information of g435.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_002157821.2, contactin-associated protein-like 5 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O14976	Cyclin-G-associated kinase OS=Homo sapiens OX=9606 GN=GAK PE=1 SV=2
Q99KY4	Cyclin-G-associated kinase OS=Mus musculus OX=10090 GN=Gak PE=1 SV=2
P97874	Cyclin-G-associated kinase OS=Rattus norvegicus OX=10116 GN=Gak PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000222 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000572 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001011 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003698 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005554 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005689 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007993 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008155 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0042479 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0048932 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0061852 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08427 all species →	ARMH3_C	Armadillo-like helical domain-containing protein 3, C-terminal	Domain	Interproscan
PF00235 all species →	Profilin	Profilin	Domain	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF02210 all species →	Laminin_G_2	Laminin G domain	Domain	Interproscan
PF00227 all species →	Proteasome	Proteasome subunit	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013636 all species →	Domain	Armadillo-like helical domain-containing protein 3, C-terminal	Interproscan
IPR039868 all species →	Family	Armadillo-like helical domain-containing protein 3-like	Interproscan
IPR048278 all species →	Family	Profilin	Interproscan
IPR036140 all species →	Homologous_superfamily	Profilin superfamily	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR043566 all species →	Family	Rabphilin/Doc2/Noc2	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR001565 all species →	Domain	Synaptotagmin	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR001791 all species →	Domain	Laminin G domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR050372 all species →	Family	Neurexin-related cell adhesion and synaptic protein	Interproscan
IPR029055 all species →	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR001353 all species →	Family	Proteasome, subunit alpha/beta	Interproscan
IPR023332 all species →	Family	Proteasome alpha-type subunit	Interproscan
IPR050115 all species →	Family	Proteasome subunit alpha	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR052560 all species →	Family	RNA-directed DNA polymerase, mobile element	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13608 all species →	UNCHARACTERIZED	Interproscan
PTHR22967 all species →	SERINE/THREONINE PROTEIN KINASE	Interproscan
PTHR45729 all species →	RABPHILIN, ISOFORM A	Interproscan
PTHR11697 all species →	GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN	Interproscan
PTHR15036 all species →	PIKACHURIN-LIKE PROTEIN	Interproscan
PTHR11599 all species →	PROTEASOME SUBUNIT ALPHA/BETA	Interproscan
PTHR36688 all species →	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035612 all species →	Molecular Function	AP-2 adaptor complex binding	Interproscan
GO:0045747 all species →	Biological Process	positive regulation of Notch signaling pathway	Interproscan
GO:2000369 all species →	Biological Process	regulation of clathrin-dependent endocytosis	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005839 all species →	Cellular Component	proteasome core complex	Interproscan
GO:0051603 all species →	Biological Process	proteolysis involved in protein catabolic process	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010498 all species →	Biological Process	proteasomal protein catabolic process	Interproscan
GO:0019773 all species →	Cellular Component	proteasome core complex, alpha-subunit complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07380	CNTNAP2; contactin associated protein-like 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →