Genomic Location: not available for this species
NR annotation: CAH1251249.1, MFHAS1 [Branchiostoma lanceolatum]
Species Calvadosia cruxmelitensis · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| B4HKJ7 | Protein Smaug OS=Drosophila sechellia OX=7238 GN=smg PE=3 SV=1 |
| B4QMP1 | Protein Smaug OS=Drosophila simulans OX=7240 GN=smg PE=3 SV=1 |
| P60320 | Protein Smaug OS=Drosophila yakuba OX=7245 GN=smg PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000425 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000429 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0001296 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0001453 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0001501 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0003323 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0004089 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0006028 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0006779 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0012673 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0061630 (this species only) · gene tree & orthology |
| Ubiquitin family | UBD|Other|SH3 · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF19704 all species → | DNAPKcs_CC5 | DNA-PKcs, CC5 | Repeat | Interproscan |
| PF00017 all species → | SH2 | SH2 domain | Domain | Interproscan |
| PF00018 all species → | SH3_1 | SH3 domain | Domain | Interproscan |
| PF07714 all species → | PK_Tyr_Ser-Thr | Protein tyrosine and serine/threonine kinase | Domain | Interproscan |
| PF01421 all species → | Reprolysin | Reprolysin (M12B) family zinc metalloprotease | Domain | Interproscan |
| PF17771 all species → | ADAMTS_CR_2 | ADAMTS cysteine-rich domain 2 | Domain | Interproscan |
| PF05986 all species → | ADAMTS_spacer1 | ADAM-TS Spacer 1 | Domain | Interproscan |
| PF19236 all species → | ADAMTS_CR_3 | ADAMTS cysteine-rich domain | Domain | Interproscan |
| PF00090 all species → | TSP_1 | Thrombospondin type 1 domain | Domain | Interproscan |
| PF19030 all species → | TSP1_ADAMTS | Thrombospondin type 1 domain | Domain | Interproscan |
| PF00536 all species → | SAM_1 | SAM domain (Sterile alpha motif) | Domain | Interproscan |
| PF01391 all species → | Collagen | Collagen triple helix repeat (20 copies) | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR045581 all species → | Domain | DNA-dependent protein kinase catalytic subunit, CC5 | Interproscan |
| IPR011009 all species → | Homologous_superfamily | Protein kinase-like domain superfamily | Interproscan |
| IPR000719 all species → | Domain | Protein kinase domain | Interproscan |
| IPR000980 all species → | Domain | SH2 domain | Interproscan |
| IPR017441 all species → | Binding_site | Protein kinase, ATP binding site | Interproscan |
| IPR036028 all species → | Homologous_superfamily | SH3-like domain superfamily | Interproscan |
| IPR001452 all species → | Domain | SH3 domain | Interproscan |
| IPR036860 all species → | Homologous_superfamily | SH2 domain superfamily | Interproscan |
| IPR001245 all species → | Domain | Serine-threonine/tyrosine-protein kinase, catalytic domain | Interproscan |
| IPR050198 all species → | Family | Non-receptor tyrosine kinases involved in cell signaling | Interproscan |
| IPR036383 all species → | Homologous_superfamily | Thrombospondin type-1 (TSP1) repeat superfamily | Interproscan |
| IPR000884 all species → | Repeat | Thrombospondin type-1 (TSP1) repeat | Interproscan |
| IPR001590 all species → | Domain | Peptidase M12B, ADAM/reprolysin | Interproscan |
| IPR041645 all species → | Domain | ADAMTS, cysteine-rich domain 2 | Interproscan |
| IPR010294 all species → | Domain | ADAMTS/ADAMTS-like, Spacer 1 | Interproscan |
| IPR013273 all species → | Family | ADAMTS/ADAMTS-like | Interproscan |
| IPR024079 all species → | Homologous_superfamily | Metallopeptidase, catalytic domain superfamily | Interproscan |
| IPR045371 all species → | Domain | ADAMTS/ADAMTS-like, cysteine-rich domain 3 | Interproscan |
| IPR050439 all species → | Family | ADAMTS and ADAMTS-like | Interproscan |
| IPR013761 all species → | Homologous_superfamily | Sterile alpha motif/pointed domain superfamily | Interproscan |
| IPR001660 all species → | Domain | Sterile alpha motif domain | Interproscan |
| IPR042344 all species → | Family | Zinc finger CCHC domain-containing protein 14 | Interproscan |
| IPR050149 all species → | Family | Collagen superfamily | Interproscan |
| IPR008160 all species → | Repeat | Collagen triple helix repeat | Interproscan |
| IPR051177 all species → | Family | Catalytically Inactive Kinase-Related Protein | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24418 all species → | TYROSINE-PROTEIN KINASE | Interproscan |
| PTHR13723 all species → | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE | Interproscan |
| PTHR16195 all species → | ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN | Interproscan |
| PTHR24023 all species → | COLLAGEN ALPHA | Interproscan |
| PTHR12984 all species → | SCY1-RELATED S/T PROTEIN KINASE-LIKE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006303 all species → | Biological Process | double-strand break repair via nonhomologous end joining | Interproscan |
| GO:0004672 all species → | Molecular Function | protein kinase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006468 all species → | Biological Process | protein phosphorylation | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0004713 all species → | Molecular Function | protein tyrosine kinase activity | Interproscan |
| GO:0004222 all species → | Molecular Function | metalloendopeptidase activity | Interproscan |
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
| GO:0030198 all species → | Biological Process | extracellular matrix organization | Interproscan |
| GO:0008237 all species → | Molecular Function | metallopeptidase activity | Interproscan |
| GO:0031012 all species → | Cellular Component | extracellular matrix | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
g437.t1.Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
