Gene detail

Detailed information of g438.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: KAI8496742.1, hypothetical protein Bbelb_253970 [Branchiostoma belcheri]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6VY07	Phosphofurin acidic cluster sorting protein 1 OS=Homo sapiens OX=9606 GN=PACS1 PE=1 SV=2
Q86VP3	Phosphofurin acidic cluster sorting protein 2 OS=Homo sapiens OX=9606 GN=PACS2 PE=1 SV=3
Q8K212	Phosphofurin acidic cluster sorting protein 1 OS=Mus musculus OX=10090 GN=Pacs1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000039 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000428 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001279 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001811 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003206 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003698 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004280 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004467 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005672 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006057 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0061858 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF01400 all species →	Astacin	Astacin (Peptidase family M12A)	Domain	Interproscan
PF01549 all species →	ShK	ShK domain-like	Domain	Interproscan
PF10254 all species →	Pacs-1	PACS-1 cytosolic sorting protein	Family	Interproscan
PF14291 all species →	DUF4371	Domain of unknown function (DUF4371)	Family	Interproscan
PF05699 all species →	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF03917 all species →	GSH_synth_ATP	Eukaryotic glutathione synthase, ATP binding domain	Domain	Interproscan
PF03199 all species →	GSH_synthase	Eukaryotic glutathione synthase	Domain	Interproscan
PF00177 all species →	Ribosomal_S7	Ribosomal protein S7p/S5e	Domain	Interproscan
PF15280 all species →	BORA_N	Protein aurora borealis N-terminus	Family	Interproscan
PF09786 all species →	CytochromB561_N	Cytochrome B561, N terminal	Family	Interproscan
PF00055 all species →	Laminin_N	Laminin N-terminal (Domain VI)	Domain	Interproscan
PF00053 all species →	Laminin_EGF	Laminin EGF domain	Domain	Interproscan
PF00652 all species →	Ricin_B_lectin	Ricin-type beta-trefoil lectin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052160 all species →	Family	Gypsy Retrotransposon Integrase-like	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR034035 all species →	Domain	Astacin-like metallopeptidase domain	Interproscan
IPR001506 all species →	Domain	Peptidase M12A	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR003582 all species →	Domain	ShKT domain	Interproscan
IPR006026 all species →	Domain	Peptidase, metallopeptidase	Interproscan
IPR019381 all species →	Family	Phosphofurin acidic cluster sorting protein 1	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR025398 all species →	Domain	Domain of unknown function DUF4371	Interproscan
IPR008906 all species →	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR006580 all species →	Domain	Zinc finger, TTF-type	Interproscan
IPR005615 all species →	Family	Glutathione synthase	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR037013 all species →	Homologous_superfamily	Glutathione synthase, substrate-binding domain superfamily	Interproscan
IPR004887 all species →	Domain	Glutathione synthase, substrate-binding domain	Interproscan
IPR014042 all species →	Homologous_superfamily	Glutathione synthase, alpha-helical	Interproscan
IPR036823 all species →	Homologous_superfamily	Small ribosomal subunit protein uS7 domain superfamily	Interproscan
IPR020606 all species →	Conserved_site	Small ribosomal subunit protein uS7, conserved site	Interproscan
IPR005716 all species →	Family	Ribosomal protein uS7, eukaryotic/archaeal	Interproscan
IPR000235 all species →	Family	Small ribosomal subunit protein uS7	Interproscan
IPR023798 all species →	Domain	Small ribosomal subunit protein uS7 domain	Interproscan
IPR023252 all species →	Family	Aurora borealis protein	Interproscan
IPR019176 all species →	Family	Cytochrome B561-related	Interproscan
IPR002049 all species →	Domain	Laminin-type EGF domain	Interproscan
IPR008211 all species →	Domain	Laminin, N-terminal	Interproscan
IPR050440 all species →	Family	Laminin/Netrin Extracellular Matrix	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR000772 all species →	Domain	Ricin B, lectin domain	Interproscan
IPR035992 all species →	Homologous_superfamily	Ricin B-like lectins	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47266 all species →	ENDONUCLEASE-RELATED	Interproscan
PTHR10127 all species →	DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING	Interproscan
PTHR13280 all species →	PHOSPHOFURIN ACIDIC CLUSTER SORTING PROTEIN	Interproscan
PTHR45749 all species →	-	Interproscan
PTHR11130 all species →	GLUTATHIONE SYNTHETASE	Interproscan
PTHR11205 all species →	RIBOSOMAL PROTEIN S7	Interproscan
PTHR21780 all species →	UNCHARACTERIZED	Interproscan
PTHR10574 all species →	NETRIN/LAMININ-RELATED	Interproscan
PTHR33395 all species →	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0072659 all species →	Biological Process	protein localization to plasma membrane	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0004363 all species →	Molecular Function	glutathione synthase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006750 all species →	Biological Process	glutathione biosynthetic process	Interproscan
GO:0016874 all species →	Molecular Function	ligase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0043295 all species →	Molecular Function	glutathione binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015935 all species →	Cellular Component	small ribosomal subunit	Interproscan
GO:0000028 all species →	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0009887 all species →	Biological Process	animal organ morphogenesis	Interproscan
GO:0009888 all species →	Biological Process	tissue development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00444	WNT5; wingless-type MMTV integration site family, member 5	-	Glycosaminoglycan binding proteins	ko00536	deepkoala
K02989	RP-S5e, RPS5; small subunit ribosomal protein S5e	-	Ribosome	ko03011	deepkoala
K23294	PACS2; phosphofurin acidic cluster sorting protein 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →