Gene detail

Detailed information of g44.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MBT3991248.1, YifB family Mg chelatase-like AAA ATPase [Rhodospirillaceae bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P45049	Competence protein ComM OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=comM PE=1 SV=1
P57015	Uncharacterized protein YifB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=yifB PE=3 SV=1
P22787	Uncharacterized protein YifB OS=Escherichia coli (strain K12) OX=83333 GN=yifB PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000000 (this species only)
Orthogroup (gene family)	OG0000431 (this species only)
Orthogroup (gene family)	OG0000996 (this species only)
Orthogroup (gene family)	OG0001597 (this species only)
Orthogroup (gene family)	OG0004592 (this species only)
Orthogroup (gene family)	OG0004982 (this species only)
Orthogroup (gene family)	OG0006268 (this species only)
Orthogroup (gene family)	OG0012652 (this species only)
Orthogroup (gene family)	OG0012708 (this species only)
Orthogroup (gene family)	OG0019288 (this species only)
Orthogroup (gene family)	OG0029690 (this species only)
Orthogroup (gene family)	OG0029709 (this species only)
Orthogroup (gene family)	OG0059711 (this species only)
Orthogroup (gene family)	OG0171663 (this species only)
Orthogroup (gene family)	OG0174389 (this species only)
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04832 all species →	SOUL	SOUL heme-binding protein	Family	Interproscan
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF13335 all species →	Mg_chelatase_C	Magnesium chelatase, subunit ChlI C-terminal	Family	Interproscan
PF01078 all species →	Mg_chelatase	Magnesium chelatase, subunit ChlI	Domain	Interproscan
PF13541 all species →	ChlI	Subunit ChlI of Mg-chelatase	Domain	Interproscan
PF00635 all species →	Motile_Sperm	MSP (Major sperm protein) domain	Domain	Interproscan
PF02791 all species →	DDT	DDT domain	Family	Interproscan
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan
PF15613 all species →	WSD	Williams-Beuren syndrome DDT (WSD), D-TOX E motif	Family	Interproscan
PF05699 all species →	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006917 all species →	Family	SOUL haem-binding protein	Interproscan
IPR011256 all species →	Homologous_superfamily	Regulatory factor, effector binding domain superfamily	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR025158 all species →	Domain	Mg chelatase-related protein, C-terminal domain	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR000523 all species →	Domain	Magnesium chelatase ChlI-like, catalytic domain	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR045006 all species →	Family	Magnesium-chelatase subunit ChlI-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004482 all species →	Family	Mg chelatase-related protein	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR016763 all species →	Family	Vesicle-associated membrane-protein-associated protein	Interproscan
IPR000535 all species →	Domain	Major sperm protein (MSP) domain	Interproscan
IPR008962 all species →	Homologous_superfamily	PapD-like superfamily	Interproscan
IPR051014 all species →	Family	Cation Transport ATPase Type IB	Interproscan
IPR036163 all species →	Homologous_superfamily	Heavy metal-associated domain superfamily	Interproscan
IPR006121 all species →	Domain	Heavy metal-associated domain, HMA	Interproscan
IPR018501 all species →	Domain	DDT domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR028941 all species →	Domain	WHIM2 domain	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR038028 all species →	Family	Nucleosome-remodeling factor subunit BPTF	Interproscan
IPR008906 all species →	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR052035 all species →	Family	Zinc finger BED domain-containing	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11220 all species →	HEME-BINDING PROTEIN-RELATED	Interproscan
PTHR32039 all species →	MAGNESIUM-CHELATASE SUBUNIT CHLI	Interproscan
PTHR10809 all species →	VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN	Interproscan
PTHR12011 all species →	ADHESION G-PROTEIN COUPLED RECEPTOR	Interproscan
PTHR48085 all species →	CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED	Interproscan
PTHR22955 all species →	RETROTRANSPOSON	Interproscan
PTHR45975 all species →	NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF	Interproscan
PTHR46481 all species →	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0033149 all species →	Molecular Function	FFAT motif binding	Interproscan
GO:0061817 all species →	Biological Process	endoplasmic reticulum-plasma membrane tethering	Interproscan
GO:0090158 all species →	Biological Process	endoplasmic reticulum membrane organization	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007189 all species →	Biological Process	adenylate cyclase-activating G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016589 all species →	Cellular Component	NURF complex	Interproscan
GO:0035064 all species →	Molecular Function	methylated histone binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07391	comM; magnesium chelatase family protein	-	Protein processing	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.