Genomic Location: chr2Alt:27177738...27181638
NR annotation: CAB4004345.1, Retrovirus-related Pol poly from transposon TNT 1-94, partial [Paramuricea clavata]
Species abbreviation ADIGI · all data for this species · gene families
| CDS |
| g4402.t1 |
| Transcript |
| chr2Alt.g4402.t1 |
| Protein |
| chr2Alt.g4402.t1 |
| UniProt accession | Description |
|---|---|
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 |
| P04146 | Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3 |
| Q9ZT94 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07727 all species → | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | Family | Interproscan |
| PF14223 all species → | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013103 all species → | Domain | Reverse transcriptase, RNA-dependent DNA polymerase | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR052510 all species → | Family | Oomycete RxLR Effector | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45895 all species → | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED | Interproscan |
g4402.t1. This gene does have a gene model — the search simply returned no hit.g4402.t1.
