Gene detail

Detailed information of g4439.t1 in Montipora capitata

Genomic Location: Sc0000082:360094...377796
NR annotation: CAH3177887.1, unnamed protein product [Porites evermanni]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g4439.t1

atggaatactgtggagaagtgatggactacagagatttccaggaaagagcagagctgtatgacagagaaaacaggcgacattattatttcatgacactcagggctgatgagtggacagtaaatggtttgcttaggattggcttctttaccctgaagcacatctctgctggaacagaactcacatttgactacaaattgcaacgctatggaaaagttgctcaggtatgttattgtgaagcgtataactgtcgtggtttcattggtggtgaaaaacagactccccttaagaacactgtagaaagaatagctactccgccaactagttccccgaggaggaggcagcggaaaaagcgaaacttaacagctgactttgacgatatcactcttgaagatgaagttgagaaattgttgggtgataacagaggcttggtacagagtgaccaagccttaaaactatcacgactgatggtgcgcgcagaaaccacagatcaaagaatcatgcttcttaaaattttgcagtatacaactgaccaggcatgtttgaaggcttttctaaggtttcaaggtttgtcacttttgtggagttggatggttgatggaggaggcaagaaagccagactacagagccagttactcgaaaccttgagatgtctgccaattgctacgaaaaaccaactggaggacagcaaggtgataaaagtcgtaagaaaatgggcaatgttgtcctgccgatttatggaatcgggctgcagtattgcgcaggacaatgacagtccaacagattctgaatgtactgccggaccagaagatgatgacgaaaaggacaagaaagtgagcagcagtcctttttttgaacgacagtgctccaataaagatcaatctgatgacgattccttggatgctgaagttgcgagcttcactgttgaaaagggtcaaaatggaagatttttaaaaggtaaaataggacctgaaaaatccccagatgatctttcagaggatgatattaaatcagaggatgagcgactgccaacagatggtgtgggagtgatggccaacgagttgctgaagtcttggagtttgcttaaagaagtttataaaatcccaaagaagtctgctaccccggcaaagcaagataggattgtagagttgtccttggtatgcagtccagcagggagcactgagggagagcattctcgtaggacaccatgcgaacaaatatcttcaccagggaggcttgacataatcatgaagactctacataattctccaagacctctgtttcctgtggagtccaggactccaccagtttctgaaggattctccacatgtagtgaacatacccttgttgaaaaggtctacgaagatgaagctccaaagccaaaaccagctgattttagcttgctagagtttggagaggtcacagaaagcaaagaaacttctacttttgatgaaaaggaagatgaaaaggacgatacaaatgcaattcatccagcgccagacagtaatcaatcatctcagaacacaaagtctcagatttcaatgcagaccttcggttaccagcagcgaatgaacttcaacatgtatcaagggtttggctgttcttttcagcaaaaacccagaggaagcaaaaagaagaaaaaaaagtggaatcaaaatcaaagttttttccagcaacaggacagaaatgtacatgggtcaggaaaggttaacgcaaacctgcaagcaaactttaatcaacagcaaggcatggctccctggagaggatcctctcagagtgtccaaaatgtttcacaaaactttcaaggaaaccaggccttctgcggtggacccatgggactaaatcagggtccaaggccccaaaatatggtacctggaaatcttgcaggaaatatgtcacaacaagcaccatcttttcctaattttagtgtgcctcctcctaatattcccccaatggaattctttcgtaaaattcctcctccaaattttccacaacaaaaccaaccagtgatagtgccccaaatccaacagaatccagtcctgccacaacaaacgcttccactgccacaccttccaccgaaccaaccaactttctttcctgttaaccagcaacctcctttcaacagacttcctcctccacctccttttcagagcaatatttctgcacaagcttccccacagtttccacagggcaacaccttgcctcagcctcaacagcttcagcaggttatgcagagtagctttccatcacagccaagtaagtttcctgcattaaactcatcaacggtaccccacctcaacattttgccagcacaacaagtacaatcggttagtcctcagggacaagtcaccatggcgattcggcatccaggcaatacaccagaagcttcatctgtttcggaggttgaatctctgatgctgcaaactggagttgtcaccacatcttcactagaaatgtatgagcacagagacaaaccagaacccagcacacctttacctgttaaatgcaacctttcacagctgccaccctactggaaggcagcaacagatcctcaaggaaaagtctactactaccatacacagactcggaaaactcaatgggaattaccacgatgggataacagtccatcatcagaggaggaaccaatcatgggacccgaagggacgagttttgcaacacacagctatcacagcgttgaagagttgtcttcgccgaaagcaaaactcaggaaactggcaaagactccctctacgcccccagggaccccccctgagagtccaacacttgcttatatcacagctgctgctgatactactgcacacagaagagatgaagataacatggatggagaaggttcctctactggctccacaactcattttaacaaggttaaggaaatgtttagaatgaagctctcaaatgtggtagtcaactgcctaaatccattcttcaaagtagattgtaaagcaggcaggatcctgaatacagaggactttaagtacttggctcggaagttaacccatggaatcttgatgaaagagcttagtcacctaaaaagcgaggaaacattgcattgcaatgactctgtcaagatcaagacaaaggaatatattcgtacatatatgaagaaatttggacctgtttataagaggacttaa

Transcript

g4439.t1

ATGGAATACTGTGGAGAAGTGATGGACTACAGAGATTTCCAGGAAAGAGCAGAGCTGTATGACAGAGAAAACAGGCGACATTattatttcatgacactcaGGGCTGATGAGTGGACAGTAAATGGTTTGCTTAGGATTGGCTTCTTTACCCTGAAGCACATCTCTGCTGGAACAGAACTCACATTTGACTACAAATTGCAACGCTATGGAAAAGTTGCTCAGGTATGTTATTGTGAAGCGTATAACTGTCGTGGTTTCATTGGTGGTGAAAAACAGACTCCCCTTAAGAACACTGTAGAAAGAATAGCTACTCCGCCAACTAGTTCCCCGAGGAGGAGGCAGCGGAAAAAGCGAAACTTAACAGCTGACTTTGACGATATCACTCTTGAAGATGAAGTTGAGAAATTGTTGGGTGATAACAGAGGCTTGGTACAGAGTGACCAAGCCTTAAAACTATCACGACTGATGGTGCGCGCAGAAACCACAGATCAAAGAATCATGCTTCTTAAAATTTTGCAGTATACAACTGACCAGGCATGTTTGAAGGCTTTTCTAAGGTTTCAAGGTTTGTCACTTTTGTGGAGTTGGATGGTTGATGGAGGAGGCAAGAAAGCCAGACTACAGAGCCAGTTACTCGAAACCTTGAGATGTCTGCCAATTGCTACGAAAAACCAACTGGAGGACAGCAAGGTGATAAAAGTCGTAAGAAAATGGGCAATGTTGTCCTGCCGATTTATGGAATCGGGCTGCAGTATTGCGCAGGACAATGACAGTCCAACAGATTCTGAATGTACTGCCGGACCAGAAGATGATGACGAAAAGGACAAGAAAGTGAGCAGCAGTCCTTTTTTTGAACGACAGTGCTCCAATAAAGATCAATCTGATGACGATTCCTTGGATGCTGAAGTTGCGAGCTTCACTGTTGAAAAGGGTCAAAATGGAAGATTTTTAAAAGGTAAAATAGGACCTGAAAAATCCCCAGATGATCTTTCAGAGGATGATATTAAATCAGAGGATGAGCGACTGCCAACAGATGGTGTGGGAGTGATGGCCAACGAGTTGCTGAAGTCTTGGAGTTTGCTTAAAGAAGTTTATAAAATCCCAAAGAAGTCTGCTACCCCGGCAAAGCAAGATAGGATTGTAGAGTTGTCCTTGGTATGCAGTCCAGCAGGGAGCACTGAGGGAGAGCATTCTCGTAGGACACCATGCGAACAAATATCTTCACCAGGGAGGCTTGACATAATCATGAAGACTCTACATAATTCTCCAAGACCTCTGTTTCCTGTGGAGTCCAGGACTCCACCAGTTTCTGAAGGATTCTCCACATGTAGTGAACATACCCTTGTTGAAAAGGTCTACGAAGATGAAGCTCCAAAGCCAAAACCAGCTGATTTTAGCTTGCTAGAGTTTGGAGAGGTCAcagaaagcaaagaaacttcTACTTTTGATGAAAAGGAAGATGAAAAGGACGATACAAATGCAATTCATCCAGCGCCAGACAGTAATCAATCATCTCAGAACACAAAGTCTCAGATTTCAATGCAGACCTTCGGTTACCAGCAGCGAATGAACTTCAACATGTATCAAGGGTTTGGCTGTTCTTTTCAGCAAAAACCCAGAGGaagcaaaaagaagaaaaaaaagtggaaTCAAAATCAAAGTTTTTTCCAGCAACAGGACAGAAATGTACATGGGTCAGGAAAGGTTAACGCAAACCTGCAAGCAAACTTTAATCAACAGCAAGGCATGGCTCCCTGGAGAGGATCCTCTCAGAGTGTCCAAAATGTTTCACAAAACTTTCAAGGAAACCAGGCCTTCTGCGGTGGACCCATGGGACTAAATCAGGGTCCAAGGCCCCAAAATATGGTACCTGGAAATCTTGCAGGAAATATGTCACAACAAGCACCATCTTTTCCTAATTTTAGTGTGCCTCCTCCTAATATTCCCCCAATGGAATTCTTTCGTAAAATTCCTCCTCCAAATTTTCCACAACAAAACCAACCAGTGATAGTGCCCCAAATCCAACAGAATCCAGTCCTGCCACAACAAACGCTTCCACTGCCACACCTTCCACCGAACCAACCAACTTTCTTTCCTGTTAACCAGCAACCTCCTTTCAACAGACTTCCTCCTCCACCTCCTTTTCAGAGCAATATTTCTGCACAAGCTTCCCCACAGTTTCCACAGGGCAACACCTTGCCTCAGCCTCAACAGCTTCAGCAGGTTATGCAGAGTAGCTTTCCATCACAGCCAAGTAAGTTTCCTGCATTAAACTCATCAACGGTACCCCACCTCAACATTTTGCCAGCACAACAAGTACAATCGGTTAGTCCTCAGGGACAAGTCACCATGGCGATTCGGCATCCAGGCAATACACCAGAAGCTTCATCTGTTTCGGAGGTTGAATCTCTGATGCTGCAAACTGGAGTTGTCACCACATCTTCACTAGAAATGTATGAGCACAGAGACAAACCAGAACCCAGCACACCTTTACCTGTTAAATGCAACCTTTCACAGCTGCCACCCTACTGGAAGGCAGCAACAGATCCTCAAGGAAAAGTCTACTACTACCATACACAGACTCGGAAAACTCAATGGGAATTACCACGATGGGATAACAGTCCATCATCAGAGGAGGAACCAATCATGGGACCCGAAGGGACGAGTTTTGCAACACACAGCTATCACAGCGTTGAAGAGTTGTCTTCGCCGAAAGCAAAACTCAGGAAACTGGCAAAGACTCCCTCTACGCCCCCAGGGACCCCCCCTGAGAGTCCAACACTTGCTTATATCACAGCTGCTGCTGATACTACTGCACACAGAAGAGATGAAGATAACATGGATGGAGAAGGTTCCTCTACTGGCTCCACAACTCATTTTAACAAGGTTAAGGAAATGTTTAGAATGAAGCTCTCAAATGTGGTAGTCAACTGCCTAAATCCATTCTTCAAAGTAGATTGTAAAGCAGGCAGGATCCTGAATACAGAGGACTTTAAGTACTTGGCTCGGAAGTTAACCCATGGAATCTTGATGAAAGAGCTTAGTCACCTAAAAAGCGAGGAAACATTGCATTGCAATGACTCTGTCAAGATCAAGACAAAGGAATATATTCGTACATATATGAAGAAATTTGGACCTGTTTATAAGAGGACTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E9Q5F9	Histone-lysine N-methyltransferase SETD2 OS=Mus musculus OX=10090 GN=Setd2 PE=1 SV=1
Q9BYW2	Histone-lysine N-methyltransferase SETD2 OS=Homo sapiens OX=9606 GN=SETD2 PE=1 SV=3
Q9VYD1	Histone-lysine N-methyltransferase Set2 OS=Drosophila melanogaster OX=7227 GN=Set2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004034 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00397 all species →	WW	WW domain	Domain	Interproscan
PF08236 all species →	SRI	SRI (Set2 Rpb1 interacting) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042294 all species →	Family	Histone-lysine N-methyltransferase SETD2, animal	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR013257 all species →	Domain	Set2 Rpb1 interacting domain	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR038190 all species →	Homologous_superfamily	Set2 Rpb1 interacting domain superfamily	Interproscan
IPR003616 all species →	Domain	Post-SET domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46711 all species →	HISTONE-LYSINE N-METHYLTRANSFERASE SETD2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016279 all species →	Molecular Function	protein-lysine N-methyltransferase activity	Interproscan
GO:0046975 all species →	Molecular Function	histone H3K36 methyltransferase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g4439.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g4439.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

179.7Max TPM

91.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	89.04	179.68
whole organisms · low pH treatment	15	15	94.41	170.64
whole organisms · extra low pH treatment pH treatment	12	12	91.85	165.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	179.68
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	175.73
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	173.34
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	150.48
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	138.56
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	119.91
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	107.03
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	105.49
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	102.72
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	100.99
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	88.74
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	82.01
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	80.52
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	69.32
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	65.17
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	56.43
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	19.49
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	15.63
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	13.88
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	12.60
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	12.07
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	170.64
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	160.93
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	157.41
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	150.75
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	149.11
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	129.60
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	97.65
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	85.02
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	74.86
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	65.39
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	63.47
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	63.01
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	17.62
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	17.13
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	13.50
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	165.43
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	157.60
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	153.79
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	142.16
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	105.00
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	95.04
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	92.45
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	78.64
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	76.56
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	12.62
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	12.28
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	10.56

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.