Gene detail

Detailed information of g445.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_031551343.1, MAM and LDL-receptor class A domain-containing protein 1-like [Actinia tenebrosa]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3EWZ5	MAM and LDL-receptor class A domain-containing protein 1 (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
B3EWZ6	MAM and LDL-receptor class A domain-containing protein 2 (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
P42674	Blastula protease 10 OS=Paracentrotus lividus OX=7656 GN=BP10 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000018 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000101 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000249 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000296 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000549 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004740 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005039 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007188 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0018805 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0032774 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0042459 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0062034 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF05817 all species →	Ribophorin_II	Oligosaccharyltransferase subunit Ribophorin II	Family	Interproscan
PF00067 all species →	p450	Cytochrome P450	Domain	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF00200 all species →	Disintegrin	Disintegrin	Domain	Interproscan
PF15359 all species →	CDV3	Carnitine deficiency-associated protein 3	Family	Interproscan
PF06990 all species →	Gal-3-0_sulfotr	Galactose-3-O-sulfotransferase	Family	Interproscan
PF00629 all species →	MAM	MAM domain, meprin/A5/mu	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF01400 all species →	Astacin	Astacin (Peptidase family M12A)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR052309 all species →	Family	C-type Lectin Domain Family 1	Interproscan
IPR050632 all species →	Family	Nematode Cuticular Collagen	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan
IPR008814 all species →	Family	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1	Interproscan
IPR050182 all species →	Family	Cytochrome P450 family 2	Interproscan
IPR036396 all species →	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR001128 all species →	Family	Cytochrome P450	Interproscan
IPR002401 all species →	Family	Cytochrome P450, E-class, group I	Interproscan
IPR017972 all species →	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR001590 all species →	Domain	Peptidase M12B, ADAM/reprolysin	Interproscan
IPR001762 all species →	Domain	Disintegrin domain	Interproscan
IPR036436 all species →	Homologous_superfamily	Disintegrin domain superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR026806 all species →	Family	Protein CDV3	Interproscan
IPR009729 all species →	Family	Galactose-3-O-sulfotransferase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000998 all species →	Domain	MAM domain	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR051560 all species →	Family	MAM domain-containing protein	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR001506 all species →	Domain	Peptidase M12A	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR034035 all species →	Domain	Astacin-like metallopeptidase domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR006026 all species →	Domain	Peptidase, metallopeptidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46490 all species →	C-TYPE LECTIN DOMAIN FAMILY 12 MEMBER A-RELATED	Interproscan
PTHR24637 all species →	COLLAGEN	Interproscan
PTHR24300 all species →	CYTOCHROME P450 508A4-RELATED	Interproscan
PTHR24248 all species →	ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR	Interproscan
PTHR11905 all species →	ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR16284 all species →	PROTEIN CDV3 HOMOLOG	Interproscan
PTHR14647 all species →	GALACTOSE-3-O-SULFOTRANSFERASE	Interproscan
PTHR23282 all species →	APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.	Interproscan
PTHR31511 all species →	PROTEIN CBG23764	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006487 all species →	Biological Process	protein N-linked glycosylation	Interproscan
GO:0008250 all species →	Cellular Component	oligosaccharyltransferase complex	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006082 all species →	Biological Process	organic acid metabolic process	Interproscan
GO:0006805 all species →	Biological Process	xenobiotic metabolic process	Interproscan
GO:0016712 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0001733 all species →	Molecular Function	galactosylceramide sulfotransferase activity	Interproscan
GO:0008146 all species →	Molecular Function	sulfotransferase activity	Interproscan
GO:0009247 all species →	Biological Process	glycolipid biosynthetic process	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08606	MEP1B; meprin B	EC:3.4.24.63	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →