Gene detail

Detailed information of g4455.t1 in Acropora digitifera

Genomic Location: chr2Alt:27890356...27893284
NR annotation: XP_015753987.1, PREDICTED: DET1 homolog [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7L5Y6	DET1 homolog OS=Homo sapiens OX=9606 GN=DET1 PE=1 SV=2
Q9D0A0	DET1 homolog OS=Mus musculus OX=10090 GN=Det1 PE=2 SV=2
Q9ZNU6	Light-mediated development protein DET1 OS=Solanum lycopersicum OX=4081 GN=DET1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09737 all species →	Det1	De-etiolated protein 1 Det1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019138 all species →	Family	De-etiolated protein 1, Det1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13374 all species →	DET1 HOMOLOG DE-ETIOLATED-1 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0031461 all species →	Cellular Component	cullin-RING ubiquitin ligase complex	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:1990756 all species →	Molecular Function	ubiquitin-like ligase-substrate adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10571	DET1; de-etiolated-1	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g4455.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

21.5Max TPM

14.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	14.02	21.45

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	21.45
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	20.45
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	19.01
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	17.45
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	17.25
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	17.07
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	16.83
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	16.58
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	15.98
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	15.77
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	15.68
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	15.15
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	15.13
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	14.97
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	14.49
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	14.45
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	14.36
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	14.20
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	13.86
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	13.61
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	13.31
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	13.04
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	12.67
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	12.64
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	12.58
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	12.57
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	12.25
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	12.19
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	11.83
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	11.78
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	11.63
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	11.41
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	11.30
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	11.30
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	10.78
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	10.66
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	10.54
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	10.35
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	10.33

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.