Gene detail

Detailed information of g4492.t1 in Montipora capitata

Genomic Location: Sc0000083:408229...413401
NR annotation: XP_015766127.1, PREDICTED: transcription elongation factor SPT5-like [Acropora digitifera]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O55201	Transcription elongation factor SPT5 OS=Mus musculus OX=10090 GN=Supt5h PE=1 SV=1
Q5R405	Transcription elongation factor SPT5 OS=Pongo abelii OX=9601 GN=SUPT5H PE=2 SV=1
O00267	Transcription elongation factor SPT5 OS=Homo sapiens OX=9606 GN=SUPT5H PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005174 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03439 all species →	Spt5-NGN	Early transcription elongation factor of RNA pol II, NGN section	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039659 all species →	Family	Transcription elongation factor SPT5	Interproscan
IPR005100 all species →	Domain	NGN domain	Interproscan
IPR039385 all species →	Domain	NGN domain, eukaryotic	Interproscan
IPR036735 all species →	Homologous_superfamily	NusG, N-terminal domain superfamily	Interproscan
IPR006645 all species →	Domain	NusG-like, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11125 all species →	SUPPRESSOR OF TY 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0032044 all species →	Cellular Component	DSIF complex	Interproscan
GO:0032784 all species →	Biological Process	regulation of DNA-templated transcription elongation	Interproscan
GO:0006354 all species →	Biological Process	DNA-templated transcription elongation	Interproscan
GO:0140673 all species →	Biological Process	transcription elongation-coupled chromatin remodeling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g4492.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.