Gene detail

Detailed information of g4493.t1 in Montipora capitata

Genomic Location: Sc0000083:414959...435054
NR annotation: CAH3161565.1, unnamed protein product [Porites lobata]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g4493.t1

atgtctccaaaagctaatgctgccaagaaatcatctattaagcaaccaactccagtttgtaaacatactacttccaaaggaccatcttctagtaaacaacaaattccagttactaaacctggcactgccaagcatccatcttctgttaaacaacaagccccagctactactcctaccgcagagcaaccatattcatcgtcttcgaccatgaccagttctcagatatctacagataaacctacaactggcaaggaaccatcttcaaaacaagccaattctactagtactactactactactactactactactactactactcctgctactgctcctgcttgtgctacttctactacgactaaccataacaacaacaaccacaatactaataataataaaaataatattaataataacaataatatcattaacaataacaataacgataatgataataataataataatctggactttgacaaaatggatgtgaaagaaattaaaggatttatctctgctaggggtgtccaagtctctacttaccgcaaacctgaccttattcagctagctaaagcagtggctagtatgaaccttccaactgaccctgactttgaaaatgattccattgaagaatgtttgataagacgccttactttaccagctggtcaaaaactcacagatccttttcaaatgacatcattgtccaatgacttctcacagctgcctccatttggactgatcgacatttttaatcatctaattatgagtaaagctgattatgataaaagcatgctgtcttcctggcgttcatttgaagaatataatctttgtttgaatgggcacatccagagccttggagttaaaactgtacaagaccttgatggcagtgatttttttgtgtttgtagctggggtcattccaacacagaaggaaaaaacacaagacggtgagaagctttacaggctctggtttattttggattcaaatgggtctgtgtactctgcattctgcaggtgtaagggtggagcagatcaaggttgcagacatttaggagcaactttgtttgaactagatgattttctttcaaatcaaaggaagtctgtcacttctatgtctgcatattggaaccccaaaccaacacccaaacacaaaccagtccctatttcagaaatgaaaatttccttcagcaatttgagaaaaaagaaaaggaaagtcaccccctctgatgattcctggattgattcatttgatcctaggcctatgaaacaaagaagggaaacaactttcaaagaaaaattggactttgcaacgaaactgagaaaaatagatccctgctctggtattcttgattttttaccatcttcaaaagactttgatgataatgaaaacagtgcacaacagcctgaaaataatatttcacatctgtatgtattatctcaagctaagatgtatgtcaaggcaaatcttgataagctttcagaagacaatttgttaaattgtgcagaagaatttctgcaaacattgacattttcagacaatgacagaatgaatattgaaaaagctactgtgggacaacacaagaacaaaacctggcataagatgagacatcttttagttactggtaaaaaaatcaaatcactttatactagacaaaaaactttagaaaaaaatccccttactgatgtatcactcactgtaaaaaattttactgaccaaaaagaatttcaagaaagccaagtgtaccctgaagccatagcatatggtataaaagaggaagatggtgcaaaatttcactattcaaaagtcagtgaaaaacagcactgttcatttgagtttgaagagcctggtctcatcataagtagacactattcctggataggagccagtctagatggtattagaaaatgtcagtgttgtgaccctacagcagtagagatgaaatgcccatttaaagggaaagaccttgaccctaaagttgctttcctgttacctagtgttggtgggaaaaaaaataaagatgggaagtattttcttgatgaaaatcacttacattatttccaagttcagactggcatggcagtttcagattcgtatgccagtggcctttggttccaaaaattcaaacagcaagtcaagcttagacctagttacacctgtataacggttaccttgaagatgattcccaggatagattacagtagatcacggggattagctaagtcagctgaggaggcaagtgaaaagagaaagaagaaaagaagaccaaccccaaaactgtttgacgcagatgcaataagaggaattggtggtgaaattgggcaggatggagatttcatgatctttgaaggcagtcgctatcgagggggattcatgtacaagactttagcaatgtctgcaatagttgtggaaggcatcaaaccaacattgctagaacttcagaaatttgagactgcacctgaagatgttgaacttgaaggcaactctaaagagggagctgatgaggagcagcatacctttgctactggtgacgttgtggaagtttctgagggtgatctggcaaatttgaagggaacagttcttagcatagatggaaacaaaattaccattatgcctaaacatgaggatttgaaggatcctttagaattcatggcgagtgagattcagaaacatttcaagatgggtgatcatgtcaaagttattggtggtcgttatgaaggagatacaggtctcatagtaagagttgaagacaacatggtcgttctgtttgccgatttaaccatgcacgagctcaaggtccttcccaaagaccttcagttgtgtgccgaaaggagcagtggagtggattccatgggtcagcaccagtggggagatatggtgcagctggatccgcagacagtgggagttatcattcgtttggacagggacatgttctcggtgctcaaccagcatggaaaggtcattcaagtcaaacatcaggctgtaggtaggagacgagagaacaagaatgctgtggccttggattcagaacagaactcagtacaagtcagggacatcgttaaagttattgaaggaccacatgcaggtttgcaaggagagatgaagcatctttatcggagttttgcgttcttgtcttcaaagatggtgatagagaatggtggcatgctggtttgcaaaacgaaacatcttgtccttgcagggggtggcaaggtaaatatttgtcagtacagagccgtatcaaatacattaggcatcagtggatttgctccagcctcacctcgaataacaagcccagccagagatggagggtatgttggaatcgtcaaagatgccactgaaacaacagctcgtgttgaactgcatagcagctgtaagaccatctctgtcgacaggacgagactcagtattgttggtggtccacccagccgtggaagttcagtttacaccaagacccctatgtatggatcacagacgcccgtgtatggatcccaaactcccatgcatggctcacggacacctatgtatggttcccagactccaactcatggagatggaagtcgcacacctcattacggctcgatgacaccatcccatgatccttcacgcactccacttcacggtggagcctgggatccaacgcagccaaatactcccgctcgtaatgaggacttcgactacaactttgacacttcaacaccctccccaggggtatatggaacgccaaatccggccactcctggaggatatggaggaccgtatacccctaatacccctgggggagggatgtatggctcagaaccgagttattctccctatacacagaccccatccccggcgggctatgggaacccgatgacacctggaagtgttgctccgatatccccagcatctccttcatttaaccctctaacccccggggccagcatggaagagactaacgctgactgggttacaaccgacattgaagtgcgaataaacgaaaatcatgaggaccctcagttgatggacaagaagggtgttgtccgcagcgtcgccggaaacacttgcacagtgtatttgtatgacgaaaagcgtgacgtcagtgtttctattaacaacgtggatcctggggaaccggttaaacaggataaggtcaaagtgattatgggagatgatcgcgaacgtgtaggaaccctcattaacattgacgatccagatggaatcatcaaaatggaccaaacagagcaattgaagattcttccgcttaagtaccttgccaagcttgggcagacaaatgtttga

Transcript

g4493.t1

ATGTCTCCAAAAGCTAATGCTGCCAAGAAATCATCTATTAAGCAACCAACTCCAGTTTGTAAACATACTACTTCCAAAGGACCATCTTCTAGTAAACAACAAATTCCAGTTACTAAACCTGGCACTGCCAAGCATCCATCTTCTGTTAAACAACAAGCCCCAGCTACTACTCCTACCGCAGAGCAACCATATTCATCGTCTTCGACCATGACCAGTTCTCAGATATCTACAGATAAACCTACAACTGGCAAGGAACCATCTtcaaaacaagccaattctactagtactactactactactactactactactactactactcctgcTACTGCTCCTGCTTGTGCTACTTCTACTACGACTAaccataacaacaacaaccacaatactaataataataaaaataatattaataataacaataatatcattaacaataacaataacgataatgataataataataataatctggaCTTTGACAAAATGGATGTGAAAGAAATTAAAGGATTTATCTCTGCTAGGGGTGTCCAAGTCTCTACTTACCGCAAACCTGACCTTATTCAGCTAGCTAAAGCAGTGGCTAGTATGAACCTTCCAACTGACCCTGACTTTGAAAATGATTCCATTGAAGAATGTTTGATAAGACGCCTTACTTTACCAGCTGGTCAAAAACTCACAGATCCTTTTCAAATGACATCATTGTCCAATGACTTCTCACAGCTGCCTCCATTTGGACTGATCGACATTTTTAATCATCTAATTATGAGTAAAGCTGATTATGATAAAAGCATGCTGTCTTCCTGGCGTTCATTTGAAGAATataatctttgtttgaatgGGCACATCCAGAGCCTTGGAGTTAAAACTGTACAAGACCTTGATGGCagtgatttttttgtgtttgtagCTGGGGTCATTCCAACACAGAAGGAAAAAACACAAGACGGTGAGAAGCTTTACAGGCTCTGGTTTATTTTGGATTCAAATGGGTCTGTGTACTCTGCATTCTGCAGGTGTAAGGGTGGAGCAGATCAAGGTTGCAGACATTTAGGAGCAACTTTGTTTGAACTAGATGATTTTCTTTCAAATCAAAGGAAGTCTGTCACTTCTATGTCTGCATATTGGAACCCCAAACCAACACCCAAACACAAACCAGTCCCTATTTCAGAAATGAAAATTTCCTTcagcaatttgagaaaaaagaaaaggaaagtcaCCCCCTCTGATGATTCCTGGATTGATTCATTTGATCCTAGGCCTATGAAACAAAGAAGGGAAACaactttcaaagaaaaattggaCTTTGCAACGAAACTGAGAAAAATAGATCCCTGCTCTGGTATTCTTGATTTTTTACCATCTTCAAAAGACTTTGATGATAATGAAAACAGTGCACAACAGCCTGAAAATAATATTTCACATCTGTATGTATTATCTCAAGCTAAGATGTATGTCAAGGCAAATCTTGATAAGCTTTCAGAAgacaatttgttaaattgtgCAGAAGAATTTCTGCAAACATTGACATTTTCAGACAATGACAGAATGAATATTGAAAAAGCTACTGTGGGACAACACAAGAACAAAACCTGGCATAAGATGAGACATCTTTTAGTTACtggtaaaaaaatcaaatcacttTATACTAGAcaaaaaactttagaaaaaaatcCCCTTACTGATGTATCACTCACTGTAAAAAATTTTACTGACCAAAAAGAATTTCAAGAAAGCCAAGTGTACCCTGAAGCCATAGCATATGGTATAAAAGAGGAAGATGGTGCAAAATTTCACTATTCAAAAGTCAGTGAAAAACAGCACTGTTCATTTGAGTTTGAAGAGCCTGGTCTCATCATAAGTAGACACTATTCCTGGATAGGAGCCAGTCTAGATGGTATTAGAAAATGTCAGTGTTGTGACCCTACAGCAGTAGAGATGAAATGCCCATTTAAAGGGAAAGACCTTGACCCTAAAGTTGCTTTCCTGTTACCTAGTGTTggtgggaaaaaaaataaagatgGGAAGTATTTTCTTGATGAAAATCACTTACATTATTTCCAAGTTCAGACTGGCATGGCAGTTTCAGATTCGTATGCCAGTGGCCTTTGGttccaaaaattcaaacagCAAGTCAAGCTTAGACCTAGTTACACCTGTATAACGGTTACCTTGAAGATGATTCCCAGGATAGATTACAGTAGATCACGGGGATTAGCTAAGTCAGCTGAgGAGGCAAGtgaaaagagaaagaagaaaagaagaccAACCCCAAAACTGTTTGACGCAGATGCAATAAGAGGAATTGGTGGTGAAATTGGGCAGGATGGAGATTTCATGATCTTTGAAGGCAGTCGCTATCGAGGGGGATTCATGTACAAGACTTTAGCAATGTCTGCAATAGTTGTGGAAGGCATCAAACCAACATTGCTAGAACTTCAGAAATTTGAGACTGCACCTGAAGATGTTGAACTTGAAGGCAACTCTAAAGAGGGAGCTGATGAGGAGCAGCATACCTTTGCTACTGGTGACGTTGTGGAAGTTTCTGAGGGTGATCTGGCAAATTTGAAGGGAACAGTTCTTAGCATAGATGGAAACAAAATTACCATTATGCCTAAACATGAGGATTTGAAGGATCCTTTAGAATTCATGGCGAGTGAGATTCAGAAACATTTCAAGATGGGTGATCATGTCAAAGTTATTGGTGGTCGTTATGAAGGAGATACAGGTCTCATAGTAAGAGTTGAAGACAACATGGTCGTTCTGTTTGCCGATTTAACCATGCACGAGCTCAAGGTCCTTCCCAAAGACCTTCAGTTGTGTGCCGAAAGGAGCAGTGGAGTGGATTCCATGGGTCAGCACCAGTGGGGAGATATGGTGCAGCTGGATCCGCAGACAGTGGGAGTTATCATTCGTTTGGACAGGGACATGTTCTCGGTGCTCAACCAGCATGGAAAGGTCATTCAAGTCAAACATCAGGCTGTAGGTAGGAGACGAGAGAACAAGAATGCTGTGGCCTTGGATTCAGAACAGAACTCAGTACAAGTCAGGGACATCGTTAAAGTTATTGAAGGACCACATGCAGGTTTGCAAGGAGAGATGAAGCATCTTTATCGGAGTTTTGCGTTCTTGTCTTCAAAGATGGTGATAGAGAATGGTGGCATGCTGGTTTGCAAAACGAAACATCTTGTCCTTGCAGGGGGTGGCAAGGTAAATATTTGTCAGTACAGAGCCGTATCAAATACATTAGGCATCAGTGGATTTGCTCCAGCCTCACCTCGAATAACAAGCCCAGCCAGAGATGGAGGGTATGTTGGAATCGTCAAAGATGCCACTGAAACAACAGCTCGTGTTGAACTGCATAGCAGCTGTAAGACCATCTCTGTCGACAGGACGAGACTCAGTATTGTTGGTGGTCCACCCAGCCGTGGAAGTTCAGTTTACACCAAGACCCCTATGTATGGATCACAGACGCCCGTGTATGGATCCCAAACTCCCATGCATGGCTCACGGACACCTATGTATGGTTCCCAGACTCCAACTCATGGAGATGGAAGTCGCACACCTCATTACGGCTCGATGACACCATCCCATGATCCTTCACGCACTCCACTTCACGGTGGAGCCTGGGATCCAACGCAGCCAAATACTCCCGCTCGTAATGAGGACTTCGACTACAACTTTGACACTTCAACACCCTCCCCAGGGGTATATGGAACGCCAAATCCGGCCACTCCTGGAGGATATGGAGGACCGTATACCCCTAATACCCCTGGGGGAGGGATGTATGGCTCAGAACCGAGTTATTCTCCCTATACACAGACCCCATCCCCGGCGGGCTATGGGAACCCGATGACACCTGGAAGTGTTGCTCCGATATCCCCAGCATCTCCTTCATTTAACCCTCTAACCCCCGGGGCCAGCATGGAAGAGACTAACGCTGACTGGGTTACAACCGACATTGAAGTGCGAATAAACGAAAATCATGAGgaccCTCAGTTGATGGACAAGAAGGGTGTTGTCCGCAGCGTCGCCGGAAACACTTGCACAGTGTATTTGTATGACGAAAAGCGTGACGTCAGTGTTTCTATTAACAACGTGGATCCTGGGGAACCGGTTAAACAGGATAAGGTCAAAGTGATTATGGGAGATGATCGCGAACGTGTAGGAACCCTCATTAACATTGACGATCCAGATGGAATCATCAAAATGGACCAAACAGAGCAATTGAAGATTCTTCCGCTTAAGTACCTTGCCAAGCTTGGGCAGACAAATGTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R405	Transcription elongation factor SPT5 OS=Pongo abelii OX=9601 GN=SUPT5H PE=2 SV=1
O00267	Transcription elongation factor SPT5 OS=Homo sapiens OX=9606 GN=SUPT5H PE=1 SV=1
Q5ZI08	Transcription elongation factor SPT5 OS=Gallus gallus OX=9031 GN=SUPT5H PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005174 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01771 all species →	Viral_alk_exo	Viral alkaline exonuclease	Family	Interproscan
PF00467 all species →	KOW	KOW motif	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005824 all species →	Domain	KOW	Interproscan
IPR041977 all species →	Domain	Spt5, KOW domain repeat 4	Interproscan
IPR041976 all species →	Domain	Spt5, KOW domain repeat 3	Interproscan
IPR039659 all species →	Family	Transcription elongation factor SPT5	Interproscan
IPR041978 all species →	Domain	Spt5, KOW domain repeat 5	Interproscan
IPR014722 all species →	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR041980 all species →	Domain	Spt5, KOW domain repeat 6	Interproscan
IPR024945 all species →	Domain	Spt5 C-terminal domain	Interproscan
IPR034720 all species →	Family	Viral alkaline exonuclease	Interproscan
IPR011335 all species →	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR011604 all species →	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR041975 all species →	Domain	Spt5, KOW domain repeat 2	Interproscan
IPR008991 all species →	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11125 all species →	SUPPRESSOR OF TY 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0032044 all species →	Cellular Component	DSIF complex	Interproscan
GO:0032784 all species →	Biological Process	regulation of DNA-templated transcription elongation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15172	SUPT5H, SPT5; transcription elongation factor SPT5	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.