Gene detail

Detailed information of g4498.t1 in Montipora capitata

Genomic Location: Sc0000083:519888...538597
NR annotation: XP_015766110.1, PREDICTED: tyrosine-protein kinase BAZ1B-like [Acropora digitifera]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O16102	Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster OX=7227 GN=Chd3 PE=1 SV=3
Q6E2N3	E3 ubiquitin-protein ligase TRIM33 OS=Danio rerio OX=7955 GN=trim33 PE=2 SV=1
Q64127	Transcription intermediary factor 1-alpha OS=Mus musculus OX=10090 GN=Trim24 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003139 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15613 all species →	WSD	Williams-Beuren syndrome DDT (WSD), D-TOX E motif	Family	Interproscan
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan
PF15612 all species →	WHIM1	WSTF, HB1, Itc1p, MBD9 motif 1	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028941 all species →	Domain	WHIM2 domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR047174 all species →	Family	Tyrosine-protein kinase BAZ1B	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR028942 all species →	Domain	WHIM1 domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46802 all species →	TYROSINE-PROTEIN KINASE BAZ1B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0035173 all species →	Molecular Function	histone kinase activity	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0090535 all species →	Cellular Component	WICH complex	Interproscan
GO:0140801 all species →	Molecular Function	histone H2AXY142 kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g4498.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.