Gene detail

Detailed information of g4499.t2 in Acropora digitifera

Genomic Location: chr2Alt:28406724...28414638
NR annotation: XP_044183518.1, spermatogenesis-associated protein 5-like protein 1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g4499.t2

ATGTCGCACGAAATGAGGGAATTCAGGTTCAGCAGAGTTCCTTGCGAAGCTAAGGATTTCAATTCTGGGAGATGTCGTGTTGCACCAAAGCTAATGGAGGAGATTGGTGGAATACTTAATTCACATGTTAAAATTACGACAGAGTCTGAAATAACGTTTTGCAACTTGTGGCCGAGGAGTGACGGTCAAGAGCATGTCATACAATTCGATACACTTGTCACTCTTCCAAACAGAGAGAAAGGAAACCAAAGTGGTGATGCATTTCCAAAGAAGAACGTACCACTAAAGAGTGTTACTGTAATTAAGCCGCTGGAAGCAAAATGTGTCGTTACAGAGCTCACTTTAACAAACTTGGCGGACGAAATTGATGGCGAAAATGTACAAGACAGTATTAGAGAAAAAGTTCTCCAACGGTTACTTAAGGGTTGCGTTGTCGTGAAAGGATGCGAAATCAGGCCAAAGGAATTAAGGAATATTCCAAAGTCATTCAGAGGTATTGCCAAGGTTTTGGTGATCTCAACAGAACCAATGACTCGTTCTGTAAAAGATACAGCGGTTCTAATTAACGAACGAACACAGATTTCTGTTCGGTCCGTTAAACGGGGTGAAATCCTTCAGAGCAATGATAATATGCAGGTGTTAGCAGGTCTTGATGATATCTCAAGAGAGTTACGGGAGATTTTAAGTTATCCTTTCCAATACCCAGATTGCTTTGACTGCCTGGGTCTTCAATGTCCCAGGGGAATTTTACTGCAAGGTGCTCCAGGGGTTGGGAAGACTCTTCTTGTGAAAACTGTTACCTCCCAGTGCAATGCTCAGCTGGTAACACTAAATGGAACTGATATTTTTGGGCCACATCAAGGAGAGAGTGAAGAAAATTTGAGAAAGATATTTGAGAATGCTAGCTTTACCAAAAAAAGAGGAAACAGTGGTAATGATCAAGAGAATAGGATTGTGGCTCAACTTCTTACTCTTCTTGATGGTTTGGAATCCTGTGGGAAGCTTGTTGTCATTGGAGCAACAAACAGGCCCCATGCTATTGACCCAGCCTTGAGAAGACCTGGAAGGCTTGATAGAGAGGTGGTGATTGGAGTACCAAATGCTGTCCAGAGATTATCTATTTTAAATGCACATACAAGAGCCATGAAATTGTCTGAGGATGTTGATCTTGCACAGCTTGCTGAAAATACATTAGGTTATGTAGGTGCTGATTTGGCCTCCTTGTGCAGGGAAGCAGCATTCATTGCTTTGAAAAGAACTCTCAGTAATGAAAGTAACAGTGGGCCCGGTTTGGGCAGCTCAAACTGGCAGAAAAAATTGAAAGGGAAGTCATCTGCCATCACTTTGGCTGATTTTCAGTTAGCTCTGTGCCATATTGTCCCCTCCATGTACAGAGGTTTGGACGGAATTGTTGAGTTCCCCCCAGTGGATTGGGATAACATTGGTGGACTAGAACATGTGAAACTTGCTCTCAAGCGGGTGATCGAGTGGCCATTAAAGCACCCAGAATGCTATGCACGCCTGGGCCTCAAATGCCCTAGGGGTATCCTTTTATATGGCCCCCCAGGATGCTGTAAGACCACACTGGTGCGTGCTGTGGCAACATCTTGTCAGTGTACATTCATGGCATTTAGTTGTGCACAGTTGTATTCACCTTACATTGGAGATGCAGAAAAAAAGATAAGAGAGATATTCACCAAGGCTCGGGCAACAGCTCCATCTATCGTGTTCTTTGATGAGCTTGATGCAATTGTCGGGAAAAGATCAGGAGCAAGTAGCACTGGGGTTGGGGGGCGTCTACTGTCCACTCTACTCAACGAAATGGACGGTGTTGGAATTTTGGCAAATATTTATCAATCAGAAGAGGAAAATAATTGTAAAACCAGCAGCCAACAGTTTATGAAAAGGAAGAGCGAGCCAGAGAAGTCTGAATATGAACAGATTTTGGATGGAACAGAACGGCGTAAACTTATTTTCTCTTCAACTGCGAAAGAAGTTGTTGTTGTAGCTGCATCCAACCGACCTGATGCTATTGATGAGGCGCTTTTAAGACCGGGCCGTATTGATCACCGTATTTATGTGCCTCCACCAGACTTGGAGGCCAGGCTACAAATCTTTAAAGTGCACACTCGTTTTACTCCCCTAGGAGATGACGTGGACTTAGAGGAACTGAGTCTGGTTACAGAGTTGTTCACAGGGGCAGATATTGAAAACTTGTGCAGAGAGGCCGCTTTATACGCTCTGGAGAACAGTGGCATGTCTGTCTGTAAAGTTGAGCATAAACATTTCATGTCTGCATTGTCCACGATAAGACCCTCCTTGACACAAGAGCAATTAAACACGTACATAATGGCGCCTGTATAA

Transcript

chr2Alt.g4499.t2

ACAAAGAAAAAGCAGCACGTGGTGGAAATACAATGTCGCACGAAATGAGGGAATTCAGGTTCAGCAGAGTTCCTTGCGAAGCTAAGGATTTCAATTCTGGGAGATGTCGTGTTGCACCAAAGCTAATGGAGGAGATTGGTGGAATACTTAATTCACATGTTAAAATTACGACAGAGTCTGAAATAACGTTTTGCAACTTGTGGCCGAGGAGTGACGGTCAAGAGCATGTCATACAATTCGATACACTTGTCACTCTTCCAAACAGAGAGAAAGGAAACCAAAGTGGTGATGCATTTCCAAAGAAGAACGTACCACTAAAGAGTGTTACTGTAATTAAGCCGCTGGAAGCAAAATGTGTCGTTACAGAGCTCACTTTAACAAACTTGGCGGACGAAATTGATGGCGAAAATGTACAAGACAGTATTAGAGAAAAAGTTCTCCAACGGTTACTTAAGGGTTGCGTTGTCGTGAAAGGATGCGAAATCAGGCCAAAGGAATTAAGGAATATTCCAAAGTCATTCAGAGGTATTGCCAAGGTTTTGGTGATCTCAACAGAACCAATGACTCGTTCTGTAAAAGATACAGCGGTTCTAATTAACGAACGAACACAGATTTCTGTTCGGTCCGTTAAACGGGGTGAAATCCTTCAGAGCAATGATAATATGCAGGTGTTAGCAGGTCTTGATGATATCTCAAGAGAGTTACGGGAGATTTTAAGTTATCCTTTCCAATACCCAGATTGCTTTGACTGCCTGGGTCTTCAATGTCCCAGGGGAATTTTACTGCAAGGTGCTCCAGGGGTTGGGAAGACTCTTCTTGTGAAAACTGTTACCTCCCAGTGCAATGCTCAGCTGGTAACACTAAATGGAACTGATATTTTTGGGCCACATCAAGGAGAGAGTGAAGAAAATTTGAGAAAGATATTTGAGAATGCTAGCTTTACCAAAAAAAGAGGAAACAGTGGTAATGATCAAGAGAATAGGATTGTGGCTCAACTTCTTACTCTTCTTGATGGTTTGGAATCCTGTGGGAAGCTTGTTGTCATTGGAGCAACAAACAGGCCCCATGCTATTGACCCAGCCTTGAGAAGACCTGGAAGGCTTGATAGAGAGGTGGTGATTGGAGTACCAAATGCTGTCCAGAGATTATCTATTTTAAATGCACATACAAGAGCCATGAAATTGTCTGAGGATGTTGATCTTGCACAGCTTGCTGAAAATACATTAGGTTATGTAGGTGCTGATTTGGCCTCCTTGTGCAGGGAAGCAGCATTCATTGCTTTGAAAAGAACTCTCAGTAATGAAAGTAACAGTGGGCCCGGTTTGGGCAGCTCAAACTGGCAGAAAAAATTGAAAGGGAAGTCATCTGCCATCACTTTGGCTGATTTTCAGTTAGCTCTGTGCCATATTGTCCCCTCCATGTACAGAGGTTTGGACGGAATTGTTGAGTTCCCCCCAGTGGATTGGGATAACATTGGTGGACTAGAACATGTGAAACTTGCTCTCAAGCGGGTGATCGAGTGGCCATTAAAGCACCCAGAATGCTATGCACGCCTGGGCCTCAAATGCCCTAGGGGTATCCTTTTATATGGCCCCCCAGGATGCTGTAAGACCACACTGGTGCGTGCTGTGGCAACATCTTGTCAGTGTACATTCATGGCATTTAGTTGTGCACAGTTGTATTCACCTTACATTGGAGATGCAGAAAAAAAGATAAGAGAGATATTCACCAAGGCTCGGGCAACAGCTCCATCTATCGTGTTCTTTGATGAGCTTGATGCAATTGTCGGGAAAAGATCAGGAGCAAGTAGCACTGGGGTTGGGGGGCGTCTACTGTCCACTCTACTCAACGAAATGGACGGTGTTGGAATTTTGGCAAATATTTATCAATCAGAAGAGGAAAATAATTGTAAAACCAGCAGCCAACAGTTTATGAAAAGGAAGAGCGAGCCAGAGAAGTCTGAATATGAACAGATTTTGGATGGAACAGAACGGCGTAAACTTATTTTCTCTTCAACTGCGAAAGAAGTTGTTGTTGTAGCTGCATCCAACCGACCTGATGCTATTGATGAGGCGCTTTTAAGACCGGGCCGTATTGATCACCGTATTTATGTGCCTCCACCAGACTTGGAGGCCAGGCTACAAATCTTTAAAGTGCACACTCGTTTTACTCCCCTAGGAGATGACGTGGACTTAGAGGAACTGAGTCTGGTTACAGAGTTGTTCACAGGGGCAGATATTGAAAACTTGTGCAGAGAGGCCGCTTTATACGCTCTGGAGAACAGTGGCATGTCTGTCTGTAAAGTTGAGCATAAACATTTCATGTCTGCATTGTCCACGATAAGACCCTCCTTGACACAAGAGCAATTAAACACGTACATAATGGCGCCTGTATAATTTTGCGTTTATTGAAACTAAAAACGGCTCAACCTTGCCTTTTTTCGGAGTACGTTGTAGTTTTCTACGGTTGCACAGCCTATCAGGAGATGAGGAAAGCCCACGTGACTTCCAAAGAGAAGCAGTGTGTGTCAAGTTTTCAACGATGATGGCGTTTCCTTGTGTGAAATCGGTGCGCAAGGCTTGATGATGAGTGGAAGCTCTGAGGTCCATTGGCGTTTGTCATCGACAGTAATCTGGTGGTTTGCGATAAGGATAAAGGCCGACTGCAAATCTTTGAACTCGATGGAAGTCATGCTGTCTCGGTGGAAGGTGAAGCAACAAAGTTAGCTTCTCCTGAATTCATTGCTGTGTCTAGGCAGGGGCACTTGTTTGTCACAGACCCAGGAAGAAATTGTGTTCGTGTTTTTCATTGAAACCTGCTTGGAACGCATTAACTGTAAACTATATGTTGCTGCGAGGAACCGGGAATTTAGCCTGACTAGTGGACATATCGCCTGCAAGCGCTTTTATTCTTTCGAGAAATTCATAGTACTTATTAATTTTGTAGTTGTTATCAATTTGCTGCGGGATCTCCGGGGGAATGGTCGCCGCTTTAACCTTAGAAATTACCACTTCATCAAGCAACCTCGTTCCTAGCGTCCTTCGTCTACCCACCTCGCTCCCTTCGGGGTGAGGATATCGGAAACGAGACCAACGAGTTCGCTAGGTTCCGACACTTCACGGTTTATTATTTTCCAAGATAGGTTTCCTTTGTTACAACTGTACTCTCGCTCAAACGTATTGCTCAACAGATCTCTCATTCGAATCACAGATTCTTTACACACCTTAAAAAATGACATACGATGGTTGTATTTTCCATTGCGCAATGGCTAATTCATCTGTCAAGACGGCGATCCCTAGTCACGAATCAGTTCAACAGAACGATTTCGGGGAACGAGGTTGCAACGACTTAAACTGCTTTCACGAGGAACAATTGAGTGACATTGATTTTGTCACATTCATTCAGTTTATTGTTACTCCGGAAGTTTACAAAAAGTGACGAGTCGTAAAGTAGTAAGTGTAACATGTGCCTCACTTTCAAGTGGAAGGAGAACACCAGTGAATTTATTACCAAGGCGTCAAAGCTCCTTCACATCCTAAGGGTTTTTGAAGTGCGCTGGGGTCCTCCCTATGGAACTCTTTTGCGTTTATAACGCCTTGTTTCGCTCCGTCCTCGAGATTTCCTAAGTCGCCTGGGCGACAAGTCTCCCGCGTTATATAGTAGACCAGATTGGAAGGATAAAGAAGAGGGCGCATCCCATTCCCCAGCCTAAAATATCGACAGGCCCTCGCAGAGGCTAAGGTGACAAGTCTTAAAATAAGGCGCGACCATCTCAATCAGAGGGTTTGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7YSY2	ATPase family gene 2 protein homolog B OS=Bos taurus OX=9913 GN=AFG2B PE=2 SV=1
Q9BVQ7	ATPase family gene 2 protein homolog B OS=Homo sapiens OX=9606 GN=AFG2B PE=1 SV=2
D4A2B7	ATPase family gene 2 protein homolog B OS=Rattus norvegicus OX=10116 GN=Afg2b PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050168 all species →	Family	AAA ATPase domain-containing protein	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23077 all species →	AAA-FAMILY ATPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26051	SPATA5L1; ribosome biogenesis protein SPATA5L1	EC:3.6.4.10	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g4499.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.