Gene detail

Detailed information of g45.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: NBX03364.1, 3-phosphoshikimate 1-carboxyvinyltransferase [Alphaproteobacteria bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7HPE1	3-phosphoshikimate 1-carboxyvinyltransferase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=aroA PE=3 SV=1
Q28UI7	3-phosphoshikimate 1-carboxyvinyltransferase OS=Jannaschia sp. (strain CCS1) OX=290400 GN=aroA PE=3 SV=1
Q161H2	3-phosphoshikimate 1-carboxyvinyltransferase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=aroA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000022 (this species only)
Orthogroup (gene family)	OG0000026 (this species only)
Orthogroup (gene family)	OG0000431 (this species only)
Orthogroup (gene family)	OG0000750 (this species only)
Orthogroup (gene family)	OG0001620 (this species only)
Orthogroup (gene family)	OG0003788 (this species only)
Orthogroup (gene family)	OG0004376 (this species only)
Orthogroup (gene family)	OG0005045 (this species only)
Orthogroup (gene family)	OG0008530 (this species only)
Orthogroup (gene family)	OG0012599 (this species only)
Orthogroup (gene family)	OG0015148 (this species only)
Orthogroup (gene family)	OG0017585 (this species only)
Orthogroup (gene family)	OG0048358 (this species only)
Orthogroup (gene family)	OG0059855 (this species only)
Orthogroup (gene family)	OG0172926 (this species only)
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02224 all species →	Cytidylate_kin	Cytidylate kinase	Domain	Interproscan
PF00275 all species →	EPSP_synthase	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)	Family	Interproscan
PF01039 all species →	Carboxyl_trans	Carboxyl transferase domain	Family	Interproscan
PF00917 all species →	MATH	MATH domain	Domain	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF00089 all species →	Trypsin	Trypsin	Domain	Interproscan
PF15711 all species →	ILEI	Interleukin-like EMT inducer	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023193 all species →	Conserved_site	3-phosphoshikimate 1-carboxyvinyltransferase, conserved site	Interproscan
IPR006264 all species →	Family	3-phosphoshikimate 1-carboxyvinyltransferase	Interproscan
IPR036968 all species →	Homologous_superfamily	Enolpyruvate transferase domain superfamily	Interproscan
IPR013792 all species →	Homologous_superfamily	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta	Interproscan
IPR011994 all species →	Domain	Cytidylate kinase domain	Interproscan
IPR001986 all species →	Domain	Enolpyruvate transferase domain	Interproscan
IPR003136 all species →	Family	Cytidylate kinase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR011762 all species →	Domain	Acetyl-coenzyme A carboxyltransferase, N-terminal	Interproscan
IPR011763 all species →	Domain	Acetyl-coenzyme A carboxyltransferase, C-terminal	Interproscan
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR051047 all species →	Family	Acyl-CoA Carboxylase Beta Subunit	Interproscan
IPR034733 all species →	Domain	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR002083 all species →	Domain	MATH/TRAF domain	Interproscan
IPR008974 all species →	Homologous_superfamily	TRAF-like	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR050164 all species →	Family	Ubiquitin carboxyl-terminal hydrolases	Interproscan
IPR053061 all species →	Family	AN1-type zinc finger domain-containing protein	Interproscan
IPR052035 all species →	Family	Zinc finger BED domain-containing	Interproscan
IPR001254 all species →	Domain	Serine proteases, trypsin domain	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR039477 all species →	Domain	ILEI/PANDER domain	Interproscan
IPR001314 all species →	Family	Peptidase S1A, chymotrypsin family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21090 all species →	AROM/DEHYDROQUINATE SYNTHASE	Interproscan
PTHR33395 all species →	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan
PTHR43842 all species →	PROPIONYL-COA CARBOXYLASE BETA CHAIN	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR24006 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan
PTHR46728 all species →	AN1-TYPE ZINC FINGER PROTEIN 4	Interproscan
PTHR46481 all species →	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan
PTHR24252 all species →	ACROSIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003866 all species →	Molecular Function	3-phosphoshikimate 1-carboxyvinyltransferase activity	Interproscan
GO:0009073 all species →	Biological Process	aromatic amino acid family biosynthetic process	Interproscan
GO:0016765 all species →	Molecular Function	transferase activity, transferring alkyl or aryl (other than methyl) groups	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004127 all species →	Molecular Function	(d)CMP kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0009423 all species →	Biological Process	chorismate biosynthetic process	Interproscan
GO:0016874 all species →	Molecular Function	ligase activity	Interproscan
GO:0004658 all species →	Molecular Function	propionyl-CoA carboxylase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0031647 all species →	Biological Process	regulation of protein stability	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00800	aroA; 3-phosphoshikimate 1-carboxyvinyltransferase	EC:2.5.1.19	Phenylalanine, tyrosine and tryptophan biosynthesis	ko00400	deepkoala
K01966	PCCB, pccB; propionyl-CoA carboxylase beta subunit	EC:6.4.1.3 EC:2.1.3.15	Valine, leucine and isoleucine degradation	ko00280	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.