Detailed information of g450.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_012563625.1, heterogeneous nuclear ribonucleoprotein L isoform X4 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8R081Heterogeneous nuclear ribonucleoprotein L OS=Mus musculus OX=10090 GN=Hnrnpl PE=1 SV=2
P14866Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens OX=9606 GN=HNRNPL PE=1 SV=2
F1LQ48Heterogeneous nuclear ribonucleoprotein L OS=Rattus norvegicus OX=10116 GN=Hnrnpl PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF02771Acyl-CoA_dh_NAcyl-CoA dehydrogenase, N-terminal domainDomainInterproscan
PF04410Gar1Gar1/Naf1 RNA binding regionDomainInterproscan
PF14529Exo_endo_phos_2Endonuclease-reverse transcriptase DomainInterproscan
PF03067LPMO_10Lytic polysaccharide mono-oxygenase, cellulose-degradingDomainInterproscan
PF000017tm_17 transmembrane receptor (rhodopsin family)FamilyInterproscan
PF00264TyrosinaseCommon central domain of tyrosinaseDomainInterproscan
PF13359DDE_Tnp_4DDE superfamily endonucleaseDomainInterproscan
PF13893RRM_5RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR013786DomainAcyl-CoA dehydrogenase/oxidase, N-terminalInterproscan
IPR052547FamilyMitochondrial Isobutyryl-CoA DehydrogenaseInterproscan
IPR009100Homologous_superfamilyAcyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamilyInterproscan
IPR037069Homologous_superfamilyAcyl-CoA dehydrogenase/oxidase, N-terminal domain superfamilyInterproscan
IPR038664Homologous_superfamilyH/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domainInterproscan
IPR009000Homologous_superfamilyTranslation protein, beta-barrel domain superfamilyInterproscan
IPR007504FamilyH/ACA ribonucleoprotein complex, subunit Gar1/Naf1Interproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR004302DomainCellulose/chitin-binding protein, N-terminalInterproscan
IPR052282FamilyStarch-active lytic polysaccharide monooxygenaseInterproscan
IPR000276FamilyG protein-coupled receptor, rhodopsin-likeInterproscan
IPR017452DomainGPCR, rhodopsin-like, 7TMInterproscan
IPR002227DomainTyrosinase copper-binding domainInterproscan
IPR008922Homologous_superfamilyDi-copper centre-containing domain superfamilyInterproscan
IPR027806DomainHarbinger transposase-derived nuclease domainInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR43831ISOBUTYRYL-COA DEHYDROGENASEInterproscan
PTHR23237NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1Interproscan
PTHR33395TRANSCRIPTASE, PUTATIVE-RELATED-RELATEDInterproscan
PTHR36575BINDING PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G14430)-RELATEDInterproscan
PTHR24246OLFACTORY RECEPTOR AND ADENOSINE RECEPTORInterproscan
PTHR22930UNCHARACTERIZEDInterproscan
PTHR15592MATRIN 3/NUCLEAR PROTEIN 220-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016627Molecular Functionoxidoreductase activity, acting on the CH-CH group of donorsInterproscan
GO:0050660Molecular Functionflavin adenine dinucleotide bindingInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0000454Biological ProcesssnoRNA guided rRNA pseudouridine synthesisInterproscan
GO:0031429Cellular Componentbox H/ACA snoRNP complexInterproscan
GO:0034513Molecular Functionbox H/ACA snoRNA bindingInterproscan
GO:0001522Biological Processpseudouridine synthesisInterproscan
GO:0042254Biological Processribosome biogenesisInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0043484Biological Processregulation of RNA splicingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11128GAR1, NOLA1; H/ACA ribonucleoprotein complex subunit 1-DNA replication proteinsko03032deepkoala

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