Gene detail

Detailed information of g451.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_031563270.1, anthrax toxin receptor 1-like [Actinia tenebrosa]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q03105	V-type proton ATPase 16 kDa proteolipid subunit c OS=Torpedo marmorata OX=7788 PE=1 SV=1
P63082	V-type proton ATPase 16 kDa proteolipid subunit c OS=Mus musculus OX=10090 GN=Atp6v0c PE=1 SV=1
P63081	V-type proton ATPase 16 kDa proteolipid subunit c OS=Rattus norvegicus OX=10116 GN=Atp6v0c PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000058 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000389 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001137 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001595 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003125 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003867 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004796 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006199 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007626 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0061634 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF00689 all species →	Cation_ATPase_C	Cation transporting ATPase, C-terminus	Family	Interproscan
PF00702 all species →	Hydrolase	haloacid dehalogenase-like hydrolase	Domain	Interproscan
PF13246 all species →	Cation_ATPase	Cation transport ATPase (P-type)	Family	Interproscan
PF00122 all species →	E1-E2_ATPase	E1-E2 ATPase	Family	Interproscan
PF00690 all species →	Cation_ATPase_N	Cation transporter/ATPase, N-terminus	Domain	Interproscan
PF14664 all species →	RICTOR_N	Rapamycin-insensitive companion of mTOR, N-term	Domain	Interproscan
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF05587 all species →	Anth_Ig	Anthrax receptor extracellular domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00567 all species →	TUDOR	Tudor domain	Domain	Interproscan
PF00137 all species →	ATP-synt_C	ATP synthase subunit C	Family	Interproscan
PF17846 all species →	XRN_M	Xrn1 helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR051065 all species →	Family	Ras-related small GTPase	Interproscan
IPR006068 all species →	Domain	Cation-transporting P-type ATPase, C-terminal	Interproscan
IPR023299 all species →	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan
IPR004014 all species →	Domain	Cation-transporting P-type ATPase, N-terminal	Interproscan
IPR023298 all species →	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR008250 all species →	Homologous_superfamily	P-type ATPase, A domain superfamily	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR050510 all species →	Family	Cation transport ATPase (P-type)	Interproscan
IPR001757 all species →	Family	P-type ATPase	Interproscan
IPR028268 all species →	Family	Pianissimo family	Interproscan
IPR028267 all species →	Domain	Rapamycin-insensitive companion of mTOR, N-terminal domain	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR008400 all species →	Domain	Anthrax toxin receptor, extracellular domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR035437 all species →	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR002379 all species →	Domain	V-ATPase proteolipid subunit C-like domain	Interproscan
IPR035921 all species →	Homologous_superfamily	F/V-ATP synthase subunit C superfamily	Interproscan
IPR011555 all species →	Family	V-ATPase proteolipid subunit C, eukaryotic	Interproscan
IPR000245 all species →	Family	V-ATPase proteolipid subunit	Interproscan
IPR047007 all species →	Homologous_superfamily	5'-3' exoribonuclease 1, D1 domain superfamily	Interproscan
IPR041412 all species →	Domain	Xrn1, helical domain	Interproscan
IPR027073 all species →	Family	5'-3' exoribonuclease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45704 all species →	RAS-LIKE FAMILY MEMBER 11	Interproscan
PTHR43294 all species →	SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA	Interproscan
PTHR13298 all species →	CYTOSOLIC REGULATOR PIANISSIMO	Interproscan
PTHR16059 all species →	ANTHRAX TOXIN RECEPTOR	Interproscan
PTHR24171 all species →	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED	Interproscan
PTHR10263 all species →	V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT	Interproscan
PTHR12341 all species →	5'->3' EXORIBONUCLEASE	Interproscan
PTHR22930 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0005391 all species →	Molecular Function	P-type sodium:potassium-exchanging transporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006883 all species →	Biological Process	intracellular sodium ion homeostasis	Interproscan
GO:0019829 all species →	Molecular Function	ATPase-coupled monoatomic cation transmembrane transporter activity	Interproscan
GO:0030007 all species →	Biological Process	intracellular potassium ion homeostasis	Interproscan
GO:0036376 all species →	Biological Process	sodium ion export across plasma membrane	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:1990573 all species →	Biological Process	potassium ion import across plasma membrane	Interproscan
GO:0005215 all species →	Molecular Function	transporter activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0031929 all species →	Biological Process	TOR signaling	Interproscan
GO:0031932 all species →	Cellular Component	TORC2 complex	Interproscan
GO:0038203 all species →	Biological Process	TORC2 signaling	Interproscan
GO:0043539 all species →	Molecular Function	protein serine/threonine kinase activator activity	Interproscan
GO:0051897 all species →	Biological Process	positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0015078 all species →	Molecular Function	proton transmembrane transporter activity	Interproscan
GO:0033177 all species →	Cellular Component	proton-transporting two-sector ATPase complex, proton-transporting domain	Interproscan
GO:0033179 all species →	Cellular Component	proton-transporting V-type ATPase, V0 domain	Interproscan
GO:0046961 all species →	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01539	ATP1A; sodium/potassium-transporting ATPase subunit alpha	EC:7.2.2.13	Exosome	ko04147	deepkoala
K02155	ATPeV0C, ATP6L; V-type H+-transporting ATPase 16kDa proteolipid subunit	-	Rheumatoid arthritis	ko05323	deepkoala
K07855	RERG; Ras-related and estrogen-regulated growth inhibitor	-	GTP-binding proteins	ko04031	deepkoala
K19467	MATN; matrilin	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →