Detailed information of g454.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_002154561.4, nibrin [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5I2W8Nibrin OS=Danio rerio OX=7955 GN=nbn PE=2 SV=2
G5EFS2RNA-binding protein Musashi homolog 1 OS=Caenorhabditis elegans OX=6239 GN=msi-1 PE=1 SV=1
O43347RNA-binding protein Musashi homolog 1 OS=Homo sapiens OX=9606 GN=MSI1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00378ECH_1Enoyl-CoA hydratase/isomeraseDomainInterproscan
PF18072FGAR-AT_linkerFormylglycinamide ribonucleotide amidotransferase linker domainDomainInterproscan
PF18076FGAR-AT_NFormylglycinamide ribonucleotide amidotransferase N-terminalDomainInterproscan
PF14716HHH_8Helix-hairpin-helix domainDomainInterproscan
PF14792DNA_pol_B_palmDNA polymerase beta palm DomainInterproscan
PF14791DNA_pol_B_thumbDNA polymerase beta thumb FamilyInterproscan
PF10391DNA_pol_lambd_fFingers domain of DNA polymerase lambdaDomainInterproscan
PF16508NIBRIN_BRCT_IISecond BRCT domain on Nijmegen syndrome breakage proteinDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001753FamilyEnoyl-CoA hydratase/isomeraseInterproscan
IPR018376Conserved_siteEnoyl-CoA hydratase/isomerase, conserved siteInterproscan
IPR029045Homologous_superfamilyClpP/crotonase-like domain superfamilyInterproscan
IPR041609DomainPhosphoribosylformylglycinamidine synthase, linker domainInterproscan
IPR036604Homologous_superfamilyPhosphoribosylformylglycinamidine synthase subunit PurS-like superfamilyInterproscan
IPR036921Homologous_superfamilyPurM-like, N-terminal domain superfamilyInterproscan
IPR040707DomainPhosphoribosylformylglycinamidine synthase, N-terminalInterproscan
IPR022312FamilyDNA polymerase family XInterproscan
IPR019843Binding_siteDNA polymerase family X, binding siteInterproscan
IPR010996DomainDNA polymerase beta-like, N-terminal domainInterproscan
IPR028207DomainDNA polymerase beta, palm domainInterproscan
IPR029398DomainDNA polymerase beta, thumb domainInterproscan
IPR002054DomainDNA-directed DNA polymerase XInterproscan
IPR043519Homologous_superfamilyNucleotidyltransferase superfamilyInterproscan
IPR002008FamilyDNA polymerase family X, beta-likeInterproscan
IPR027421Homologous_superfamilyDNA polymerase lambda lyase domain superfamilyInterproscan
IPR018944DomainDNA polymerase lambda, fingers domainInterproscan
IPR037160Homologous_superfamilyDNA polymerase, thumb domain superfamilyInterproscan
IPR043014Homologous_superfamilyNibrin, second BRCT domain superfamilyInterproscan
IPR036420Homologous_superfamilyBRCT domain superfamilyInterproscan
IPR013908DomainNibrin, C-terminalInterproscan
IPR032429DomainNibrin, second BRCT domainInterproscan
IPR040227FamilyNibrin-relatedInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR027469Homologous_superfamilyCation efflux transmembrane domain superfamilyInterproscan
IPR026765FamilyTransmembrane protein 163Interproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11941ENOYL-COA HYDRATASE-RELATEDInterproscan
PTHR10099PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASEInterproscan
PTHR11276DNA POLYMERASE TYPE-X FAMILY MEMBERInterproscan
PTHR12162NIBRIN-RELATEDInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR31937TRANSMEMBRANE PROTEIN 163Interproscan
PTHR48032RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0004300Molecular Functionenoyl-CoA hydratase activityInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0006635Biological Processfatty acid beta-oxidationInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003887Molecular FunctionDNA-directed DNA polymerase activityInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0016779Molecular Functionnucleotidyltransferase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006303Biological Processdouble-strand break repair via nonhomologous end joiningInterproscan
GO:0034061Molecular FunctionDNA polymerase activityInterproscan
GO:0000724Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0003684Molecular Functiondamaged DNA bindingInterproscan
GO:0006302Biological Processdouble-strand break repairInterproscan
GO:0007095Biological Processmitotic G2 DNA damage checkpoint signalingInterproscan
GO:0030870Cellular ComponentMre11 complexInterproscan
GO:0032508Biological ProcessDNA duplex unwindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005844Cellular Componentobsolete polysomeInterproscan
GO:0006417Biological Processregulation of translationInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14694SLC30A11, ZNT11; solute carrier family 30 (zinc transporter), member 11-DNA repair and recombination proteinsko03400deepkoala
Transportersko02000deepkoala

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