Gene detail

Detailed information of g455.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_020625254.1, syntaxin-16-like isoform X3 [Orbicella faveolata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O14662	Syntaxin-16 OS=Homo sapiens OX=9606 GN=STX16 PE=1 SV=3
Q8BVI5	Syntaxin-16 OS=Mus musculus OX=10090 GN=Stx16 PE=1 SV=3
Q9SUJ1	Syntaxin-43 OS=Arabidopsis thaliana OX=3702 GN=SYP43 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000015 (this species only)
Orthogroup (gene family)	OG0000323 (this species only)
Orthogroup (gene family)	OG0000715 (this species only)
Orthogroup (gene family)	OG0001683 (this species only)
Orthogroup (gene family)	OG0001964 (this species only)
Orthogroup (gene family)	OG0003657 (this species only)
Orthogroup (gene family)	OG0004431 (this species only)
Orthogroup (gene family)	OG0004500 (this species only)
Orthogroup (gene family)	OG0007147 (this species only)
Orthogroup (gene family)	OG0008461 (this species only)
Orthogroup (gene family)	OG0008854 (this species only)
Orthogroup (gene family)	OG0014201 (this species only)
Orthogroup (gene family)	OG0019726 (this species only)
Orthogroup (gene family)	OG0048322 (this species only)
Orthogroup (gene family)	OG0174518 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08241 all species →	Methyltransf_11	Methyltransferase domain	Domain	Interproscan
PF17146 all species →	PIN_6	PIN domain of ribonuclease	Domain	Interproscan
PF05739 all species →	SNARE	SNARE domain	Family	Interproscan
PF00804 all species →	Syntaxin	Syntaxin	Domain	Interproscan
PF02181 all species →	FH2	Formin Homology 2 Domain	Family	Interproscan
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF02494 all species →	HYR	HYR domain	Domain	Interproscan
PF07699 all species →	Ephrin_rec_like	Tyrosine-protein kinase ephrin type A/B receptor-like	Domain	Interproscan
PF05118 all species →	Asp_Arg_Hydrox	Aspartyl/Asparaginyl beta-hydroxylase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051422 all species →	Family	AlkB Family tRNA Methyltransferase/Dioxygenase	Interproscan
IPR013216 all species →	Domain	Methyltransferase type 11	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR033411 all species →	Domain	Ribonuclease, PIN domain	Interproscan
IPR039907 all species →	Family	RNA-binding protein NOB1	Interproscan
IPR000727 all species →	Domain	Target SNARE coiled-coil homology domain	Interproscan
IPR010989 all species →	Homologous_superfamily	SNARE	Interproscan
IPR006012 all species →	Conserved_site	Syntaxin/epimorphin, conserved site	Interproscan
IPR045242 all species →	Family	Syntaxin	Interproscan
IPR006011 all species →	Domain	Syntaxin, N-terminal domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR042201 all species →	Homologous_superfamily	Formin, FH2 domain superfamily	Interproscan
IPR015425 all species →	Domain	Formin, FH2 domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR003410 all species →	Domain	HYR domain	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR043555 all species →	Family	Sushi repeat-containing protein SRPX-like	Interproscan
IPR011641 all species →	Domain	Tyrosine-protein kinase ephrin type A/B receptor-like	Interproscan
IPR027443 all species →	Homologous_superfamily	Isopenicillin N synthase-like superfamily	Interproscan
IPR007803 all species →	Domain	Aspartyl/asparaginy/proline hydroxylase	Interproscan
IPR051821 all species →	Family	Aspartyl/Asparaginyl beta-hydroxylase domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13069 all species →	UNCHARACTERIZED	Interproscan
PTHR12814 all species →	RNA-BINDING PROTEIN NOB1	Interproscan
PTHR19957 all species →	SYNTAXIN	Interproscan
PTHR45920 all species →	FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR47978 all species →	-	Interproscan
PTHR46343 all species →	HYR DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR46332 all species →	ASPARTATE BETA-HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2	Interproscan
PTHR47018 all species →	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008757 all species →	Molecular Function	S-adenosylmethionine-dependent methyltransferase activity	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0030490 all species →	Biological Process	maturation of SSU-rRNA	Interproscan
GO:0030688 all species →	Cellular Component	preribosome, small subunit precursor	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0005484 all species →	Molecular Function	SNAP receptor activity	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0006906 all species →	Biological Process	vesicle fusion	Interproscan
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0031201 all species →	Cellular Component	SNARE complex	Interproscan
GO:0048278 all species →	Biological Process	vesicle docking	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0030866 all species →	Biological Process	cortical actin cytoskeleton organization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0018193 all species →	Biological Process	peptidyl-amino acid modification	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08489	STX16; syntaxin 16	-	Membrane trafficking	ko04131	deepkoala
K23939	FHOD3, FHOS2; FH1/FH2 domain-containing protein 3	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.