Gene detail

Detailed information of g4563.t2 in Acropora digitifera

Genomic Location: chr2Alt:29248863...29265621
NR annotation: XP_029186065.2, helicase-like transcription factor [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g4563.t2

ATGGCAGAAGTCAATGGGAATTCGTCAACTGATGTAAATACGTCACAAATGCCCCAGAATCCTTCAATTATTTGTAACACCAGCAGCATCGGAGATCAGTCTTGTAAATGCTCATCTTCAAGTGATGATAATTTTCATGAAGACATCAAAAAGCCAAGAGATCAAAAAGCCGACGTAAGTGTTGGACTCGAAGCCTCGAGGGAAGGAGGAGATGTTGAGAAGATTAGTCCAAATGTGACTGTTCATACGCATCCATGCATTTCTGGAAATTATATTAATACACAATCAAACTTTGAAACAGTCGGAAAAGAGGAACAGTTGTGTACAGGGGAATCTACTGAGGGCAAAGTTGAACTTTGTGACCATCAAGTGGGATTGTGTGACACCACAAGAAATGTCTCCTATGAAAAGAAACCTACTATCACGTGTGCACCCATAGTTGATGCATTCACAAATTCTGCGCATGTAAATCTTCCAGTTTGTTCTTCCAAAGGAGCGCAGTGCAGGTCAAGTGTTCATTCTTTTAACTTCAGTTCAGAAAACAATGTGGTGCCACCGTTGAGTCAGCTTTTACAAGAAGAATCTGCAACTAGAAGTTTTGATAGTCATCAAGTATGTAATGGCCCAGCAACTACCAGCAATGGCATGATTGTGCCGCAAGGGAATGCTGAACCAGGATTGCAAACATCTTCATCTAAGATTAAACTTGTAACTGAGACTGGAAGCCATAGTGTTCCAACCAGCTTGCAAGAGAATGATCACGGAGTACAGTCTCATGCTAAAACTACTATACCATTTTTTAATCTTGAGAATAAAAAAGAAGATATTACACCAAGTCTATTGTTAACAACAATACCACAGTCGACGCCGGCCACTTTGTTGTGTCCTCTTATGTTGTTACCGGTATCTCCTCAATTTGTATCAACAGCTGTTGACGTGGCAGTCATTTCAGTTTCTCCTGAACTGAGTTCTTCAAGTTTTGGTTGTTCAAGTAAACAATTGGGTTCCAGCTCAGTACCTTTAGCATCAAACCAGATGACAGTAGCCTCAACTTTATCTCCTTGTTTACAAGTCTCAGCAGCCACTCACCAACAAGTCGCTGAATCAAAAGTTTCAGTTGTCAAAGAGGAACTTGTACCCTCAAGCTTTACAGGAACTTCGTTGTTGTCAGGTTCTCAAGATACTGCATCTGTGATCACTGAAGATAGCACAAACATTGCCCCACAGAACCCAACAGCTATTTCTAATTTTACTCCATGCAGTAAATGTAACTCATTACTAGTTTGTTCATGTTCAAAAGCCTCTGCAACTGAGGTTGTGCCAGCTGTCAGTGCTCTGAGCTCCAGTGCATTCTGCTCCAGCAATACAAATGGGAATGTACCAAATTCGCCTCCACCAGATGTGAAACCTCAAATATTTCAAGTGGTGCCTTTAAATCGCTTGGATCAGCTGTTTGAAAGCTTGGTTGAATATGTTAAGATCGCCAAAGCTGAACAGCCAGAGGCCATCACTACGCAGCTGTTCCCTCATCAAATGCAAGCTCTTAACTGGATGATAATAAGAGAGAACAACACTGATTTAGCTCCATTTTGGACACAAGTTAGCAATTCCATATGGATCAACAAAGGAACCAATTTTTCTACTGACAGAAAACCAGATTCTCCCAAAGGTGGAATCCTTGCTGATGATATGGGGCTTGGGAAAACTCTGACAGTTATTACCCTGATCATGGCCAATCACTGCAATGGAAAGCCGATGTTCTTGAGAAGAGCATCAAACCAAAAGAGGGCACCATCAACTTCAAGTGAAGAAAGCACATGCAAGTCTGAGCCAGCAAAGAAAGTGGCACAAACAGACGCATGTGACAGTGATGATGATGATGGTGTTGTAAATAAGGTTGCCATTAAAAAGAGAAAAGGCACAGTAGGCAACATGAAAAGACTGGCTGACAGTAAGGCATTAAAACAACCAGGCTTTAAATTTAGGCAAATGTACCTCTCTAAGATTGCCAGTAAATCACCTAAGAAGGAAAAATCAAAAGAAGAGAAATCTAGAACACCACCAACACCTGTCAAAACTCCTGATGACAACCATTATAGTGTTTTGGTTGTTGACAAGGAAATGAAATCCATGGAAGGTGGTCACAGCAGTAGATCTCCTGTTACGGAAAACACTGCAACATTGATTGTCTGTCCAGTGTCTGTGCTTAGTAATTGGACGGACCAGATATTTCGTCATGTGCATCGAGATGTCAGATTGCAAGTGTACATGTATTATGGACCAGAGCGTTTAAGGGACTTGAAGTTTCTAAGAGAACAAGACATTGTTCTCACTACTTATCCAACACTCACCAATGATTACAGCCGTAAGGATTCACCTCTTCACAAGATTAAATGGTTACGCGTGATCTTAGATGAAGGTCATACCATAAGGAACCCACAGACCCGCCTCACCAACGCTATGTTGGACCTAGAAGCCAGTCGCAGATGGGTCCTTACAGGAACACCAATACAGAATAGATTGGATGATTTGTGGTCACTGATCAGGTTTTTAAGATTGAAGCCGTTTGATGACAAGTTCTGGTGGAATTCCAATGTTGCCGATAGTGTTAGACGAGGTTGTCCCCAAGGTGTCAACCGTTTGCAGAAACTTCTAAAACACATTTCCATCAGACGACTCAAGTTTGACAAGCATGAAGGTAAACTTCTTGTTGAACTGCCACCTCGTACTGTGGTGATACAGGAGGTGGAACTTTCCAAGGAAGAGCGAGAGTTGTACGATTCCATGCAGAAGGATGGACAGTTGATCATTACAAGGTATATCCGAGATGGTGTGATTCACCGAAGATATGCGCACTGTTTTGCTATTTTACTGCGTCTGCGTCAATTGTGTTTACATCCCAGTCTATGTGCCAAAGACAGTGAACGGGTACAGAATGCACGAAACATCTTGCAAGCTCTAGGTGTGAATCTTGATGCGAATCACGACTCTCAAGAACACATTGCAGACCTTTTTGTGGCCTTATCATCGGGAGTTGACGAAGAGTGCCCAGTTTGTTTTGATTCGCTGGTCGACCCCGTCATCACTCGTTGTGCGCATGCCTTTTGCCGACAGTGCATTATGGATAGGATATCGTCAGAGGATATGGCGCCTAATTGCCCGTTGTGCAGTGCGCCAGTCAACGAGAATGACTTGATTAAAGTCCCGGAGAATACGATAAAGAAATCATCTGAAACGGAGAAACCAAACGAAGAAATGACTACAGTCGAGAAAAACAGTTCTAAGCTTGAAGCGCTGTTGAGTGCACTGGATGTCATTAGAAACAAGAACCCCTCTATTAAGAGTCTTGTGGTGTCCCAGTTCACGTCTTTTTTGGACTTAATTGGGGATGCTCTCCGAAGAGAAAACTTTCTGTTCGTGAGACTGGACGGAAGAATGACACAGGAAGCCAGAGCACGAGCCATAGAGAGATTTTCAGACACTAGTTCCAGCGCTCCAACCGTGTTTTTGTTGTCATTGACAGCTGGAGGAGTGGGCTTGAATCTAACTGCTGCAACACGTGTGTTTCTTTTGGATCCGGCGTGGAATCCAGCAGTTGAGGAACAGTGTTTCGATCGCTGCCATCGCTTGGGTCAAACACAAGAAGTCATCATCACAAAGTACATTGTCACGAATTCCATAGAAGAGCGAATGTTGACACTGCAAGAACAGAAGCGAGAGCTGATGAGCCAGGCCTTTGGTTTGAATACGCAGAGTCGGGAGGACAGGAGACGATCTCGCGTCAGAGAAATCAGGCATCTGATTGGTCTGTGA

Transcript

chr2Alt.g4563.t2

AGAAGTGCATAACAGAGAAAACTCCCCTGACAGATGGCCTCTTGACTACATTGAGGTCTGCACATAAAATTATGCATTATAAAAAGAAGCTGGGTGAAGAGGAAGGATAAGAAAGCCAAGAGATGTTTTGACAGGTCTGGATTGCTAAGAATGGCAGAAGTCAATGGGAATTCGTCAACTGATGTAAATACGTCACAAATGCCCCAGAATCCTTCAATTATTTGTAACACCAGCAGCATCGGAGATCAGTCTTGTAAATGCTCATCTTCAAGTGATGATAATTTTCATGAAGACATCAAAAAGCCAAGAGATCAAAAAGCCGACGTAAGTGTTGGACTCGAAGCCTCGAGGGAAGGAGGAGATGTTGAGAAGATTAGTCCAAATGTGACTGTTCATACGCATCCATGCATTTCTGGAAATTATATTAATACACAATCAAACTTTGAAACAGTCGGAAAAGAGGAACAGTTGTGTACAGGGGAATCTACTGAGGGCAAAGTTGAACTTTGTGACCATCAAGTGGGATTGTGTGACACCACAAGAAATGTCTCCTATGAAAAGAAACCTACTATCACGTGTGCACCCATAGTTGATGCATTCACAAATTCTGCGCATGTAAATCTTCCAGTTTGTTCTTCCAAAGGAGCGCAGTGCAGGTCAAGTGTTCATTCTTTTAACTTCAGTTCAGAAAACAATGTGGTGCCACCGTTGAGTCAGCTTTTACAAGAAGAATCTGCAACTAGAAGTTTTGATAGTCATCAAGTATGTAATGGCCCAGCAACTACCAGCAATGGCATGATTGTGCCGCAAGGGAATGCTGAACCAGGATTGCAAACATCTTCATCTAAGATTAAACTTGTAACTGAGACTGGAAGCCATAGTGTTCCAACCAGCTTGCAAGAGAATGATCACGGAGTACAGTCTCATGCTAAAACTACTATACCATTTTTTAATCTTGAGAATAAAAAAGAAGATATTACACCAAGTCTATTGTTAACAACAATACCACAGTCGACGCCGGCCACTTTGTTGTGTCCTCTTATGTTGTTACCGGTATCTCCTCAATTTGTATCAACAGCTGTTGACGTGGCAGTCATTTCAGTTTCTCCTGAACTGAGTTCTTCAAGTTTTGGTTGTTCAAGTAAACAATTGGGTTCCAGCTCAGTACCTTTAGCATCAAACCAGATGACAGTAGCCTCAACTTTATCTCCTTGTTTACAAGTCTCAGCAGCCACTCACCAACAAGTCGCTGAATCAAAAGTTTCAGTTGTCAAAGAGGAACTTGTACCCTCAAGCTTTACAGGAACTTCGTTGTTGTCAGGTTCTCAAGATACTGCATCTGTGATCACTGAAGATAGCACAAACATTGCCCCACAGAACCCAACAGCTATTTCTAATTTTACTCCATGCAGTAAATGTAACTCATTACTAGTTTGTTCATGTTCAAAAGCCTCTGCAACTGAGGTTGTGCCAGCTGTCAGTGCTCTGAGCTCCAGTGCATTCTGCTCCAGCAATACAAATGGGAATGTACCAAATTCGCCTCCACCAGATGTGAAACCTCAAATATTTCAAGTGGTGCCTTTAAATCGCTTGGATCAGCTGTTTGAAAGCTTGGTTGAATATGTTAAGATCGCCAAAGCTGAACAGCCAGAGGCCATCACTACGCAGCTGTTCCCTCATCAAATGCAAGCTCTTAACTGGATGATAATAAGAGAGAACAACACTGATTTAGCTCCATTTTGGACACAAGTTAGCAATTCCATATGGATCAACAAAGGAACCAATTTTTCTACTGACAGAAAACCAGATTCTCCCAAAGGTGGAATCCTTGCTGATGATATGGGGCTTGGGAAAACTCTGACAGTTATTACCCTGATCATGGCCAATCACTGCAATGGAAAGCCGATGTTCTTGAGAAGAGCATCAAACCAAAAGAGGGCACCATCAACTTCAAGTGAAGAAAGCACATGCAAGTCTGAGCCAGCAAAGAAAGTGGCACAAACAGACGCATGTGACAGTGATGATGATGATGGTGTTGTAAATAAGGTTGCCATTAAAAAGAGAAAAGGCACAGTAGGCAACATGAAAAGACTGGCTGACAGTAAGGCATTAAAACAACCAGGCTTTAAATTTAGGCAAATGTACCTCTCTAAGATTGCCAGTAAATCACCTAAGAAGGAAAAATCAAAAGAAGAGAAATCTAGAACACCACCAACACCTGTCAAAACTCCTGATGACAACCATTATAGTGTTTTGGTTGTTGACAAGGAAATGAAATCCATGGAAGGTGGTCACAGCAGTAGATCTCCTGTTACGGAAAACACTGCAACATTGATTGTCTGTCCAGTGTCTGTGCTTAGTAATTGGACGGACCAGATATTTCGTCATGTGCATCGAGATGTCAGATTGCAAGTGTACATGTATTATGGACCAGAGCGTTTAAGGGACTTGAAGTTTCTAAGAGAACAAGACATTGTTCTCACTACTTATCCAACACTCACCAATGATTACAGCCGTAAGGATTCACCTCTTCACAAGATTAAATGGTTACGCGTGATCTTAGATGAAGGTCATACCATAAGGAACCCACAGACCCGCCTCACCAACGCTATGTTGGACCTAGAAGCCAGTCGCAGATGGGTCCTTACAGGAACACCAATACAGAATAGATTGGATGATTTGTGGTCACTGATCAGGTTTTTAAGATTGAAGCCGTTTGATGACAAGTTCTGGTGGAATTCCAATGTTGCCGATAGTGTTAGACGAGGTTGTCCCCAAGGTGTCAACCGTTTGCAGAAACTTCTAAAACACATTTCCATCAGACGACTCAAGTTTGACAAGCATGAAGGTAAACTTCTTGTTGAACTGCCACCTCGTACTGTGGTGATACAGGAGGTGGAACTTTCCAAGGAAGAGCGAGAGTTGTACGATTCCATGCAGAAGGATGGACAGTTGATCATTACAAGGTATATCCGAGATGGTGTGATTCACCGAAGATATGCGCACTGTTTTGCTATTTTACTGCGTCTGCGTCAATTGTGTTTACATCCCAGTCTATGTGCCAAAGACAGTGAACGGGTACAGAATGCACGAAACATCTTGCAAGCTCTAGGTGTGAATCTTGATGCGAATCACGACTCTCAAGAACACATTGCAGACCTTTTTGTGGCCTTATCATCGGGAGTTGACGAAGAGTGCCCAGTTTGTTTTGATTCGCTGGTCGACCCCGTCATCACTCGTTGTGCGCATGCCTTTTGCCGACAGTGCATTATGGATAGGATATCGTCAGAGGATATGGCGCCTAATTGCCCGTTGTGCAGTGCGCCAGTCAACGAGAATGACTTGATTAAAGTCCCGGAGAATACGATAAAGAAATCATCTGAAACGGAGAAACCAAACGAAGAAATGACTACAGTCGAGAAAAACAGTTCTAAGCTTGAAGCGCTGTTGAGTGCACTGGATGTCATTAGAAACAAGAACCCCTCTATTAAGAGTCTTGTGGTGTCCCAGTTCACGTCTTTTTTGGACTTAATTGGGGATGCTCTCCGAAGAGAAAACTTTCTGTTCGTGAGACTGGACGGAAGAATGACACAGGAAGCCAGAGCACGAGCCATAGAGAGATTTTCAGACACTAGTTCCAGCGCTCCAACCGTGTTTTTGTTGTCATTGACAGCTGGAGGAGTGGGCTTGAATCTAACTGCTGCAACACGTGTGTTTCTTTTGGATCCGGCGTGGAATCCAGCAGTTGAGGAACAGTGTTTCGATCGCTGCCATCGCTTGGGTCAAACACAAGAAGTCATCATCACAAAGTACATTGTCACGAATTCCATAGAAGAGCGAATGTTGACACTGCAAGAACAGAAGCGAGAGCTGATGAGCCAGGCCTTTGGTTTGAATACGCAGAGTCGGGAGGACAGGAGACGATCTCGCGTCAGAGAAATCAGGCATCTGATTGGTCTGTGATCTGGAGATACATGGAATCTTTATTTTGGCTCACCCTTGGCCACGTTTTTTCCAACGTATATAGTCACACCGAACGGTGGTTTATTGGGATGTCACATAAAAAGTTTATTCACTGGAAATGGTGCTTTAAAACATTTGTAAAGAACCTGAAATCAGCGAAACTCGGGATTGGAGTATATATAACTGTTAAAGACTCAAACGAACCGCGAACCGGTGGCTCAGTTGGTTGATAGGATGTCACGCGGGAGGTCGTGAGTTCGACTCCGGCCAGACCAACACTCAGGGTCTTAAAATAACTGAGTAGAAAGTGCTGTCTTTGTAATTACTTCAGCAAATGGTTTCAAGTCTTCTCGGATAAGGACTATAAACCGTAGGTCCCGTCTCACAGATAACCTTCCATGTTTATAGGTTTCATGAAGTTCCTTTCCTGTCCTTTGTGAGTGAGTTAGCGAAGTTGATATACCTCCCATGGATCTTAGGGTACCGTTCGTATACCACCTGCACTTCTTTGCAAAAAGTTGTCGAAAAAAAAAACTATGTGGTTGCAAAAATATGTTTTGTTGAAAATTTGGAATATTGTCAAAAGTAAGAATTTTAATTATGCATGCATGAATTATAGATTACTAAATGGAGGTAGAGGTGTTAAATTATGAGAACAGTTTATTCTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PCN7	Helicase-like transcription factor OS=Mus musculus OX=10090 GN=Hltf PE=1 SV=1
Q14527	Helicase-like transcription factor OS=Homo sapiens OX=9606 GN=HLTF PE=1 SV=2
Q95216	Helicase-like transcription factor OS=Oryctolagus cuniculus OX=9986 GN=HLTF PE=1 SV=1

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR050628 all species →	Family	SNF2/RAD54 Helicase and Transcription Factor	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45626 all species →	TRANSCRIPTION TERMINATION FACTOR 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0008094 all species →	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15711	SMARCA3, HLTF; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3	EC:5.6.2. EC:2.3.2.27	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.