Gene detail

Detailed information of g4584.t1.1 in Haliclystus octoradiatus

Genomic Location: not available for this species
NR annotation: XP_001634444.3, cytoplasmic tRNA 2-thiolation protein 2 [Nematostella vectensis]
Species abbreviation HOCTO · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3SZG9	Cytoplasmic tRNA 2-thiolation protein 2 OS=Bos taurus OX=9913 GN=CTU2 PE=2 SV=2
Q3B7U4	Cytoplasmic tRNA 2-thiolation protein 2 OS=Rattus norvegicus OX=10116 GN=Ctu2 PE=2 SV=2
Q3U308	Cytoplasmic tRNA 2-thiolation protein 2 OS=Mus musculus OX=10090 GN=Ctu2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007424 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10288 all species →	CTU2	Cytoplasmic tRNA 2-thiolation protein 2	Family	Interproscan
PF01171 all species →	ATP_bind_3	PP-loop family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR019407 all species →	Family	Cytoplasmic tRNA 2-thiolation protein 2	Interproscan
IPR011063 all species →	Domain	tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20882 all species →	CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0002098 all species →	Biological Process	tRNA wobble uridine modification	Interproscan
GO:0002143 all species →	Biological Process	tRNA wobble position uridine thiolation	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016783 all species →	Molecular Function	sulfurtransferase activity	Interproscan
GO:0034227 all species →	Biological Process	tRNA thio-modification	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14169	CTU2, NCS2; cytoplasmic tRNA 2-thiolation protein 2	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.