Gene detail

Detailed information of g4585.t1.1 in Blastomussa wellsi

Genomic Location: :...
NR annotation: XP_020612819.1, collagen alpha-1(XII) chain-like isoform X2 [Orbicella faveolata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q28833	von Willebrand factor (Fragment) OS=Sus scrofa OX=9823 GN=VWF PE=2 SV=2
O35701	Matrilin-3 OS=Mus musculus OX=10090 GN=Matn3 PE=1 SV=2
O15232	Matrilin-3 OS=Homo sapiens OX=9606 GN=MATN3 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00092	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF00229	TNF	TNF(Tumour Necrosis Factor) family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR050525	Family	Extracellular Matrix Assembly and Organization	Interproscan
IPR006052	Domain	Tumour necrosis factor domain	Interproscan
IPR008983	Homologous_superfamily	Tumour necrosis factor-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24020	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005164	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0006955	Biological Process	immune response	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan