Gene detail

Detailed information of g46.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_127765479.1, 30S ribosomal protein S1 [Hwanghaeella grinnelliae]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P14129	Small ribosomal subunit protein bS1 OS=Rhizobium meliloti (strain 1021) OX=266834 GN=rpsA PE=3 SV=2
Q6NDP1	Small ribosomal subunit protein bS1 OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) OX=258594 GN=rpsA PE=1 SV=1
Q1RJH1	Small ribosomal subunit protein bS1 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rpsA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000044 (this species only)
Orthogroup (gene family)	OG0000454 (this species only)
Orthogroup (gene family)	OG0000746 (this species only)
Orthogroup (gene family)	OG0001310 (this species only)
Orthogroup (gene family)	OG0001532 (this species only)
Orthogroup (gene family)	OG0001567 (this species only)
Orthogroup (gene family)	OG0004519 (this species only)
Orthogroup (gene family)	OG0004888 (this species only)
Orthogroup (gene family)	OG0011882 (this species only)
Orthogroup (gene family)	OG0012568 (this species only)
Orthogroup (gene family)	OG0017422 (this species only)
Orthogroup (gene family)	OG0017771 (this species only)
Orthogroup (gene family)	OG0041307 (this species only)
Orthogroup (gene family)	OG0080419 (this species only)
Orthogroup (gene family)	OG0171196 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07691 all species →	PA14	PA14 domain	Domain	Interproscan
PF03148 all species →	Tektin	Tektin family	Family	Interproscan
PF02933 all species →	CDC48_2	Cell division protein 48 (CDC48), domain 2	Domain	Interproscan
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF02359 all species →	CDC48_N	Cell division protein 48 (CDC48), N-terminal domain	Domain	Interproscan
PF00575 all species →	S1	S1 RNA binding domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF09588 all species →	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan
PF04916 all species →	Phospholip_B	Phospholipase B	Family	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF01082 all species →	Cu2_monooxygen	Copper type II ascorbate-dependent monooxygenase, N-terminal domain	Domain	Interproscan
PF03712 all species →	Cu2_monoox_C	Copper type II ascorbate-dependent monooxygenase, C-terminal domain	Domain	Interproscan
PF03351 all species →	DOMON	DOMON domain	Domain	Interproscan
PF02811 all species →	PHP	PHP domain	Family	Interproscan
PF03989 all species →	DNA_gyraseA_C	DNA gyrase C-terminal domain, beta-propeller	Repeat	Interproscan
PF07733 all species →	DNA_pol3_alpha	Bacterial DNA polymerase III alpha NTPase domain	Domain	Interproscan
PF17657 all species →	DNA_pol3_finger	Bacterial DNA polymerase III alpha subunit finger domain	Domain	Interproscan
PF00521 all species →	DNA_topoisoIV	DNA gyrase/topoisomerase IV, subunit A	Family	Interproscan
PF14579 all species →	HHH_6	Helix-hairpin-helix motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052387 all species →	Family	Fibrocystin-related protein	Interproscan
IPR011658 all species →	Domain	PA14 domain	Interproscan
IPR037524 all species →	Domain	PA14/GLEYA domain	Interproscan
IPR048256 all species →	Family	Tektin-like	Interproscan
IPR000435 all species →	Family	Tektins	Interproscan
IPR003338 all species →	Domain	CDC48, N-terminal subdomain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR004201 all species →	Domain	CDC48, domain 2	Interproscan
IPR050168 all species →	Family	AAA ATPase domain-containing protein	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR029067 all species →	Homologous_superfamily	CDC48 domain 2-like superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR009010 all species →	Homologous_superfamily	Aspartate decarboxylase-like domain superfamily	Interproscan
IPR005938 all species →	Family	AAA ATPase, CDC48 family	Interproscan
IPR003029 all species →	Domain	S1 domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR000110 all species →	Family	Small ribosomal subunit protein bS1	Interproscan
IPR050437 all species →	Family	Bacterial ribosomal protein bS1	Interproscan
IPR035104 all species →	Family	Ribosomal protein S1-like	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR044765 all species →	Domain	DDX47/Rrp3, DEAD-box helicase domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR050079 all species →	Family	DEAD box RNA helicase	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR011335 all species →	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR019080 all species →	Domain	YqaJ viral recombinase	Interproscan
IPR011604 all species →	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR051703 all species →	Family	NF-kappa-B Signaling Regulator	Interproscan
IPR043042 all species →	Homologous_superfamily	Phospholipase B-like, domain 3	Interproscan
IPR007000 all species →	Family	Phospholipase B-like	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR050663 all species →	Family	Ankyrin Repeat and SOCS Box	Interproscan
IPR000323 all species →	Domain	Copper type II, ascorbate-dependent monooxygenase, N-terminal	Interproscan
IPR005018 all species →	Domain	DOMON domain	Interproscan
IPR024548 all species →	Domain	Copper type II ascorbate-dependent monooxygenase, C-terminal	Interproscan
IPR036939 all species →	Homologous_superfamily	Copper type II, ascorbate-dependent monooxygenase, N-terminal domain superfamily	Interproscan
IPR008977 all species →	Homologous_superfamily	PHM/PNGase F domain superfamily	Interproscan
IPR014784 all species →	Homologous_superfamily	Copper type II, ascorbate-dependent monooxygenase-like, C-terminal	Interproscan
IPR000945 all species →	Family	Dopamine beta-hydroxylase-like	Interproscan
IPR045266 all species →	Domain	Copper-dependent monooxygenases, DOMON domain	Interproscan
IPR004013 all species →	Domain	PHP domain	Interproscan
IPR013757 all species →	Homologous_superfamily	DNA topoisomerase, type IIA, alpha-helical domain superfamily	Interproscan
IPR006691 all species →	Repeat	DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat	Interproscan
IPR011708 all species →	Domain	Bacterial DNA polymerase III, alpha subunit, NTPase domain	Interproscan
IPR013760 all species →	Homologous_superfamily	DNA topoisomerase, type IIA-like domain superfamily	Interproscan
IPR035516 all species →	Homologous_superfamily	DNA gyrase/topoisomerase IV, subunit A, C-terminal	Interproscan
IPR004805 all species →	Family	Error-prone DNA polymerase/DNA polymerase III subunit alpha DnaE/PolC	Interproscan
IPR016195 all species →	Homologous_superfamily	Polymerase/histidinol phosphatase-like	Interproscan
IPR040982 all species →	Domain	DNA polymerase III alpha subunit finger domain	Interproscan
IPR049821 all species →	Domain	DnaE1-like, PHP domain	Interproscan
IPR003141 all species →	Domain	Polymerase/histidinol phosphatase, N-terminal	Interproscan
IPR002205 all species →	Domain	DNA topoisomerase, type IIA, domain A	Interproscan
IPR041931 all species →	Homologous_superfamily	Bacterial DNA polymerase III alpha subunit, thumb domain	Interproscan
IPR029460 all species →	Domain	DNA polymerase, helix-hairpin-helix motif	Interproscan
IPR013758 all species →	Homologous_superfamily	DNA topoisomerase, type IIA, domain A, alpha-beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46769 all species →	POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1	Interproscan
PTHR19960 all species →	TEKTIN	Interproscan
PTHR23077 all species →	AAA-FAMILY ATPASE	Interproscan
PTHR10724 all species →	30S RIBOSOMAL PROTEIN S1	Interproscan
PTHR47959 all species →	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan
PTHR46609 all species →	EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR24193 all species →	ANKYRIN REPEAT PROTEIN	Interproscan
PTHR10157 all species →	DOPAMINE BETA HYDROXYLASE RELATED	Interproscan
PTHR32294 all species →	DNA POLYMERASE III SUBUNIT ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0060294 all species →	Biological Process	cilium movement involved in cell motility	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0030970 all species →	Biological Process	retrograde protein transport, ER to cytosol	Interproscan
GO:0031593 all species →	Molecular Function	polyubiquitin modification-dependent protein binding	Interproscan
GO:0034098 all species →	Cellular Component	VCP-NPL4-UFD1 AAA ATPase complex	Interproscan
GO:0051228 all species →	Biological Process	mitotic spindle disassembly	Interproscan
GO:0071712 all species →	Biological Process	obsolete ER-associated misfolded protein catabolic process	Interproscan
GO:0097352 all species →	Biological Process	autophagosome maturation	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0004620 all species →	Molecular Function	phospholipase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0016715 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004500 all species →	Molecular Function	dopamine beta-monooxygenase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0006589 all species →	Biological Process	octopamine biosynthetic process	Interproscan
GO:0030667 all species →	Cellular Component	secretory granule membrane	Interproscan
GO:0042420 all species →	Biological Process	dopamine catabolic process	Interproscan
GO:0042421 all species →	Biological Process	norepinephrine biosynthetic process	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003918 all species →	Molecular Function	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	Interproscan
GO:0003916 all species →	Molecular Function	DNA topoisomerase activity	Interproscan
GO:0006265 all species →	Biological Process	DNA topological change	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0006259 all species →	Biological Process	DNA metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02945	RP-S1, rpsA; small subunit ribosomal protein S1	-	Ribosome	ko03011	deepkoala
K13525	VCP, CDC48; transitional endoplasmic reticulum ATPase	-	Exosome	ko04147	deepkoala
K14777	DDX47, RRP3; ATP-dependent RNA helicase DDX47/RRP3	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.