Detailed information of g46.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_127765479.1, 30S ribosomal protein S1 [Hwanghaeella grinnelliae]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P14129Small ribosomal subunit protein bS1 OS=Rhizobium meliloti (strain 1021) OX=266834 GN=rpsA PE=3 SV=2
Q6NDP1Small ribosomal subunit protein bS1 OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) OX=258594 GN=rpsA PE=1 SV=1
Q1RJH1Small ribosomal subunit protein bS1 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rpsA PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07691PA14PA14 domainDomainInterproscan
PF03148TektinTektin familyFamilyInterproscan
PF02933CDC48_2Cell division protein 48 (CDC48), domain 2DomainInterproscan
PF17862AAA_lid_3AAA+ lid domainDomainInterproscan
PF00004AAAATPase family associated with various cellular activities (AAA)DomainInterproscan
PF02359CDC48_NCell division protein 48 (CDC48), N-terminal domainDomainInterproscan
PF00575S1S1 RNA binding domainDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF09588YqaJYqaJ-like viral recombinase domainDomainInterproscan
PF04916Phospholip_BPhospholipase BFamilyInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF01082Cu2_monooxygenCopper type II ascorbate-dependent monooxygenase, N-terminal domainDomainInterproscan
PF03712Cu2_monoox_CCopper type II ascorbate-dependent monooxygenase, C-terminal domainDomainInterproscan
PF03351DOMONDOMON domainDomainInterproscan
PF02811PHPPHP domainFamilyInterproscan
PF03989DNA_gyraseA_CDNA gyrase C-terminal domain, beta-propellerRepeatInterproscan
PF07733DNA_pol3_alphaBacterial DNA polymerase III alpha NTPase domainDomainInterproscan
PF17657DNA_pol3_fingerBacterial DNA polymerase III alpha subunit finger domainDomainInterproscan
PF00521DNA_topoisoIVDNA gyrase/topoisomerase IV, subunit AFamilyInterproscan
PF14579HHH_6Helix-hairpin-helix motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR052387FamilyFibrocystin-related proteinInterproscan
IPR011658DomainPA14 domainInterproscan
IPR037524DomainPA14/GLEYA domainInterproscan
IPR048256FamilyTektin-likeInterproscan
IPR000435FamilyTektinsInterproscan
IPR003338DomainCDC48, N-terminal subdomainInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR003960Conserved_siteATPase, AAA-type, conserved siteInterproscan
IPR004201DomainCDC48, domain 2Interproscan
IPR050168FamilyAAA ATPase domain-containing proteinInterproscan
IPR041569DomainAAA ATPase, AAA+ lid domainInterproscan
IPR003959DomainATPase, AAA-type, coreInterproscan
IPR029067Homologous_superfamilyCDC48 domain 2-like superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR009010Homologous_superfamilyAspartate decarboxylase-like domain superfamilyInterproscan
IPR005938FamilyAAA ATPase, CDC48 familyInterproscan
IPR003029DomainS1 domainInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR000110FamilySmall ribosomal subunit protein bS1Interproscan
IPR050437FamilyBacterial ribosomal protein bS1Interproscan
IPR035104FamilyRibosomal protein S1-likeInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR000629Conserved_siteATP-dependent RNA helicase DEAD-box, conserved siteInterproscan
IPR044765DomainDDX47/Rrp3, DEAD-box helicase domainInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR050079FamilyDEAD box RNA helicaseInterproscan
IPR014014DomainRNA helicase, DEAD-box type, Q motifInterproscan
IPR011335Homologous_superfamilyRestriction endonuclease type II-likeInterproscan
IPR019080DomainYqaJ viral recombinaseInterproscan
IPR011604Homologous_superfamilyPD-(D/E)XK endonuclease-like domain superfamilyInterproscan
IPR051703FamilyNF-kappa-B Signaling RegulatorInterproscan
IPR043042Homologous_superfamilyPhospholipase B-like, domain 3Interproscan
IPR007000FamilyPhospholipase B-likeInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR050663FamilyAnkyrin Repeat and SOCS BoxInterproscan
IPR000323DomainCopper type II, ascorbate-dependent monooxygenase, N-terminalInterproscan
IPR005018DomainDOMON domainInterproscan
IPR024548DomainCopper type II ascorbate-dependent monooxygenase, C-terminalInterproscan
IPR036939Homologous_superfamilyCopper type II, ascorbate-dependent monooxygenase, N-terminal domain superfamilyInterproscan
IPR008977Homologous_superfamilyPHM/PNGase F domain superfamilyInterproscan
IPR014784Homologous_superfamilyCopper type II, ascorbate-dependent monooxygenase-like, C-terminalInterproscan
IPR000945FamilyDopamine beta-hydroxylase-likeInterproscan
IPR045266DomainCopper-dependent monooxygenases, DOMON domainInterproscan
IPR004013DomainPHP domainInterproscan
IPR013757Homologous_superfamilyDNA topoisomerase, type IIA, alpha-helical domain superfamilyInterproscan
IPR006691RepeatDNA gyrase/topoisomerase IV, subunit A, C-terminal repeatInterproscan
IPR011708DomainBacterial DNA polymerase III, alpha subunit, NTPase domainInterproscan
IPR013760Homologous_superfamilyDNA topoisomerase, type IIA-like domain superfamilyInterproscan
IPR035516Homologous_superfamilyDNA gyrase/topoisomerase IV, subunit A, C-terminalInterproscan
IPR004805FamilyError-prone DNA polymerase/DNA polymerase III subunit alpha DnaE/PolCInterproscan
IPR016195Homologous_superfamilyPolymerase/histidinol phosphatase-likeInterproscan
IPR040982DomainDNA polymerase III alpha subunit finger domainInterproscan
IPR049821DomainDnaE1-like, PHP domainInterproscan
IPR003141DomainPolymerase/histidinol phosphatase, N-terminalInterproscan
IPR002205DomainDNA topoisomerase, type IIA, domain AInterproscan
IPR041931Homologous_superfamilyBacterial DNA polymerase III alpha subunit, thumb domainInterproscan
IPR029460DomainDNA polymerase, helix-hairpin-helix motifInterproscan
IPR013758Homologous_superfamilyDNA topoisomerase, type IIA, domain A, alpha-betaInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46769POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1Interproscan
PTHR19960TEKTINInterproscan
PTHR23077AAA-FAMILY ATPASEInterproscan
PTHR1072430S RIBOSOMAL PROTEIN S1Interproscan
PTHR47959ATP-DEPENDENT RNA HELICASE RHLE-RELATEDInterproscan
PTHR46609EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEINInterproscan
PTHR24193ANKYRIN REPEAT PROTEINInterproscan
PTHR10157DOPAMINE BETA HYDROXYLASE RELATEDInterproscan
PTHR32294DNA POLYMERASE III SUBUNIT ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005634Cellular ComponentnucleusInterproscan
GO:0015630Cellular Componentmicrotubule cytoskeletonInterproscan
GO:0060271Biological Processcilium assemblyInterproscan
GO:0060294Biological Processcilium movement involved in cell motilityInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0030433Biological Processobsolete ubiquitin-dependent ERAD pathwayInterproscan
GO:0030970Biological Processretrograde protein transport, ER to cytosolInterproscan
GO:0031593Molecular Functionpolyubiquitin modification-dependent protein bindingInterproscan
GO:0034098Cellular ComponentVCP-NPL4-UFD1 AAA ATPase complexInterproscan
GO:0051228Biological Processmitotic spindle disassemblyInterproscan
GO:0071712Biological Processobsolete ER-associated misfolded protein catabolic processInterproscan
GO:0097352Biological Processautophagosome maturationInterproscan
GO:0016787Molecular Functionhydrolase activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0004620Molecular Functionphospholipase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000976Molecular Functiontranscription cis-regulatory region bindingInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0004497Molecular Functionmonooxygenase activityInterproscan
GO:0005507Molecular Functioncopper ion bindingInterproscan
GO:0016715Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygenInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0004500Molecular Functiondopamine beta-monooxygenase activityInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0006589Biological Processoctopamine biosynthetic processInterproscan
GO:0030667Cellular Componentsecretory granule membraneInterproscan
GO:0042420Biological Processdopamine catabolic processInterproscan
GO:0042421Biological Processnorepinephrine biosynthetic processInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003918Molecular FunctionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activityInterproscan
GO:0003916Molecular FunctionDNA topoisomerase activityInterproscan
GO:0006265Biological ProcessDNA topological changeInterproscan
GO:0006260Biological ProcessDNA replicationInterproscan
GO:0008408Molecular Function3'-5' exonuclease activityInterproscan
GO:0006259Biological ProcessDNA metabolic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13525VCP, CDC48; transitional endoplasmic reticulum ATPase-Ribosomeko03011deepkoala
Ribosome biogenesisko03009deepkoala
Exosomeko04147deepkoala

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