Gene detail

Detailed information of g461.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047146074.1, 5'-3' exonuclease PLD3 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PB03	5'-3' exonuclease PLD3 OS=Xenopus laevis OX=8355 GN=pld3 PE=2 SV=1
Q640B3	5'-3' exonuclease PLD3 OS=Xenopus tropicalis OX=8364 GN=pld3 PE=2 SV=1
O17405	Probable phospholipase D F09G2.8 OS=Caenorhabditis elegans OX=6239 GN=F09G2.8 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000033 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000072 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000122 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000182 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001488 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002419 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006389 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006902 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007537 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008331 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008422 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008704 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 activity\|HECT · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15743 all species →	SPATA1_C	Spermatogenesis-associated C-terminus	Family	Interproscan
PF07743 all species →	HSCB_C	HSCB C-terminal oligomerisation domain	Domain	Interproscan
PF13918 all species →	PLDc_3	PLD-like domain	Domain	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF12576 all species →	DUF3754	Protein of unknown function (DUF3754)	Family	Interproscan
PF00083 all species →	Sugar_tr	Sugar (and other) transporter	Family	Interproscan
PF01602 all species →	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan
PF19283 all species →	APEH_N	Acylamino-acid-releasing enzyme, N-terminal domain	Family	Interproscan
PF10272 all species →	Tmpp129	Putative transmembrane protein precursor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031478 all species →	Domain	Spermatogenesis-associated protein 1, C-terminal domain	Interproscan
IPR039062 all species →	Family	Spermatogenesis-associated protein 1	Interproscan
IPR036386 all species →	Homologous_superfamily	HscB, C-terminal domain superfamily	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR004640 all species →	Family	Co-chaperone Hsc20	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR009073 all species →	Domain	Co-chaperone HscB, C-terminal oligomerisation domain	Interproscan
IPR001736 all species →	Domain	Phospholipase D/Transphosphatidylase	Interproscan
IPR050874 all species →	Family	Diverse function phospholipase D-related protein	Interproscan
IPR032803 all species →	Domain	PLD-like domain	Interproscan
IPR051787 all species →	Family	Effector and Ciliary Development-Associated Protein	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR022227 all species →	Family	Protein of unknown function DUF3754	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR005828 all species →	Family	Major facilitator, sugar transporter-like	Interproscan
IPR026739 all species →	Family	AP complex subunit beta	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR002553 all species →	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR036457 all species →	Homologous_superfamily	PPM-type phosphatase-like domain superfamily	Interproscan
IPR039123 all species →	Family	Protein phosphatase PTC7 homolog	Interproscan
IPR001932 all species →	Domain	PPM-type phosphatase-like domain	Interproscan
IPR035983 all species →	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR000569 all species →	Domain	HECT domain	Interproscan
IPR045550 all species →	Domain	Acylamino-acid-releasing enzyme, N-terminal domain	Interproscan
IPR018801 all species →	Family	E3 ubiquitin-protein ligase TM129	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14421 all species →	SPERMATOGENESIS-ASSOCIATED PROTEIN 1	Interproscan
PTHR14021 all species →	IRON-SULFUR CLUSTER CO-CHAPERONE PROTEIN HSCB	Interproscan
PTHR22955 all species →	RETROTRANSPOSON	Interproscan
PTHR10185 all species →	PHOSPHOLIPASE D - RELATED	Interproscan
PTHR45641 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan
PTHR16095 all species →	TRANSMEMBRANE PROTEIN 143 FAMILY MEMBER	Interproscan
PTHR24064 all species →	SOLUTE CARRIER FAMILY 22 MEMBER	Interproscan
PTHR11134 all species →	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	Interproscan
PTHR12320 all species →	PROTEIN PHOSPHATASE 2C	Interproscan
PTHR42776 all species →	SERINE PEPTIDASE S9 FAMILY MEMBER	Interproscan
PTHR31322 all species →	E3 UBIQUITIN-PROTEIN LIGASE TM129	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0051259 all species →	Biological Process	protein complex oligomerization	Interproscan
GO:0001671 all species →	Molecular Function	ATPase activator activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0044571 all species →	Biological Process	[2Fe-2S] cluster assembly	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan
GO:0004722 all species →	Molecular Function	protein serine/threonine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16860	PLD3_4; phospholipase D3/4	EC:3.1.4.4	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.