Gene detail

Detailed information of g464.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAH3142410.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28739	Bactericidal permeability-increasing protein (Fragment) OS=Oryctolagus cuniculus OX=9986 GN=BPI PE=2 SV=1
Q8C1E1	BPI fold-containing family B member 2 OS=Mus musculus OX=10090 GN=Bpifb2 PE=2 SV=1
Q9WVF7	DNA polymerase epsilon catalytic subunit A OS=Mus musculus OX=10090 GN=Pole PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000183 (this species only)
Orthogroup (gene family)	OG0000784 (this species only)
Orthogroup (gene family)	OG0001342 (this species only)
Orthogroup (gene family)	OG0001569 (this species only)
Orthogroup (gene family)	OG0001735 (this species only)
Orthogroup (gene family)	OG0002396 (this species only)
Orthogroup (gene family)	OG0002978 (this species only)
Orthogroup (gene family)	OG0004064 (this species only)
Orthogroup (gene family)	OG0004406 (this species only)
Orthogroup (gene family)	OG0008612 (this species only)
Orthogroup (gene family)	OG0021037 (this species only)
Orthogroup (gene family)	OG0025860 (this species only)
Orthogroup (gene family)	OG0048267 (this species only)
Orthogroup (gene family)	OG0171564 (this species only)
Orthogroup (gene family)	OG0172311 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02944 all species →	BESS	BESS motif	Motif	Interproscan
PF10545 all species →	MADF_DNA_bdg	Alcohol dehydrogenase transcription factor Myb/SANT-like	Domain	Interproscan
PF07479 all species →	NAD_Gly3P_dh_C	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus	Domain	Interproscan
PF01210 all species →	NAD_Gly3P_dh_N	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus	Family	Interproscan
PF00989 all species →	PAS	PAS fold	Domain	Interproscan
PF14598 all species →	PAS_11	PAS domain	Domain	Interproscan
PF02190 all species →	LON_substr_bdg	ATP-dependent protease La (LON) substrate-binding domain	Family	Interproscan
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF08490 all species →	DUF1744	Domain of unknown function (DUF1744)	Domain	Interproscan
PF02886 all species →	LBP_BPI_CETP_C	LBP / BPI / CETP family, C-terminal domain	Domain	Interproscan
PF01273 all species →	LBP_BPI_CETP	LBP / BPI / CETP family, N-terminal domain	Family	Interproscan
PF11277 all species →	Med24_N	Mediator complex subunit 24 N-terminal	Family	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039353 all species →	Family	Transcription factor Adf-1	Interproscan
IPR004210 all species →	Domain	BESS motif	Interproscan
IPR006578 all species →	Domain	MADF domain	Interproscan
IPR006109 all species →	Domain	Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR006168 all species →	Family	Glycerol-3-phosphate dehydrogenase, NAD-dependent	Interproscan
IPR013328 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan
IPR011128 all species →	Domain	Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR013767 all species →	Domain	PAS fold	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR000014 all species →	Domain	PAS domain	Interproscan
IPR001067 all species →	Family	Nuclear translocator	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR001610 all species →	Repeat	PAC motif	Interproscan
IPR042319 all species →	Family	Glycoprotein integral membrane protein 1	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR046336 all species →	Homologous_superfamily	Lon protease, N-terminal domain superfamily	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR003111 all species →	Domain	Lon protease, N-terminal domain	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR029703 all species →	Family	DNA polymerase epsilon catalytic subunit	Interproscan
IPR013697 all species →	Domain	DNA polymerase epsilon, catalytic subunit A, C-terminal	Interproscan
IPR017942 all species →	Domain	Lipid-binding serum glycoprotein, N-terminal	Interproscan
IPR001124 all species →	Domain	Lipid-binding serum glycoprotein, C-terminal	Interproscan
IPR017943 all species →	Homologous_superfamily	Bactericidal permeability-increasing protein, alpha/beta domain superfamily	Interproscan
IPR032942 all species →	Family	BPI/LBP/Plunc family	Interproscan
IPR021429 all species →	Family	Mediator complex, subunit Med24,	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12243 all species →	MADF DOMAIN TRANSCRIPTION FACTOR	Interproscan
PTHR11728 all species →	GLYCEROL-3-PHOSPHATE DEHYDROGENASE	Interproscan
PTHR23043 all species →	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	Interproscan
PTHR28549 all species →	GLYCOPROTEIN INTEGRAL MEMBRANE PROTEIN 1	Interproscan
PTHR22955 all species →	RETROTRANSPOSON	Interproscan
PTHR23327 all species →	RING FINGER PROTEIN 127	Interproscan
PTHR10670 all species →	DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A	Interproscan
PTHR46601 all species →	ULP_PROTEASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR10504 all species →	BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED	Interproscan
PTHR12898 all species →	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 24	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0047952 all species →	Molecular Function	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity	Interproscan
GO:0006072 all species →	Biological Process	glycerol-3-phosphate metabolic process	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0046168 all species →	Biological Process	glycerol-3-phosphate catabolic process	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan
GO:0004367 all species →	Molecular Function	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006116 all species →	Biological Process	NADH oxidation	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006272 all species →	Biological Process	leading strand elongation	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006287 all species →	Biological Process	base-excision repair, gap-filling	Interproscan
GO:0006297 all species →	Biological Process	nucleotide-excision repair, DNA gap filling	Interproscan
GO:0008310 all species →	Molecular Function	single-stranded DNA 3'-5' DNA exonuclease activity	Interproscan
GO:0008622 all species →	Cellular Component	epsilon DNA polymerase complex	Interproscan
GO:0045004 all species →	Biological Process	DNA replication proofreading	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08268	HIF1A; hypoxia-inducible factor 1 alpha	-	Transcription factors	ko03000	deepkoala
K25374	BPI; bactericidal permeability-increasing protein	-	Others	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.