Detailed information of g464.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAH3142410.1, unnamed protein product [Pocillopora meandrina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q28739Bactericidal permeability-increasing protein (Fragment) OS=Oryctolagus cuniculus OX=9986 GN=BPI PE=2 SV=1
Q8C1E1BPI fold-containing family B member 2 OS=Mus musculus OX=10090 GN=Bpifb2 PE=2 SV=1
Q9WVF7DNA polymerase epsilon catalytic subunit A OS=Mus musculus OX=10090 GN=Pole PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02944BESSBESS motifMotifInterproscan
PF10545MADF_DNA_bdgAlcohol dehydrogenase transcription factor Myb/SANT-likeDomainInterproscan
PF07479NAD_Gly3P_dh_CNAD-dependent glycerol-3-phosphate dehydrogenase C-terminusDomainInterproscan
PF01210NAD_Gly3P_dh_NNAD-dependent glycerol-3-phosphate dehydrogenase N-terminusFamilyInterproscan
PF00989PASPAS foldDomainInterproscan
PF14598PAS_11PAS domainDomainInterproscan
PF02190LON_substr_bdgATP-dependent protease La (LON) substrate-binding domain FamilyInterproscan
PF00097zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF08490DUF1744Domain of unknown function (DUF1744)DomainInterproscan
PF02886LBP_BPI_CETP_CLBP / BPI / CETP family, C-terminal domainDomainInterproscan
PF01273LBP_BPI_CETPLBP / BPI / CETP family, N-terminal domainFamilyInterproscan
PF11277Med24_NMediator complex subunit 24 N-terminalFamilyInterproscan
PF00169PHPH domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039353FamilyTranscription factor Adf-1Interproscan
IPR004210DomainBESS motifInterproscan
IPR006578DomainMADF domainInterproscan
IPR006109DomainGlycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminalInterproscan
IPR008927Homologous_superfamily6-phosphogluconate dehydrogenase-like, C-terminal domain superfamilyInterproscan
IPR006168FamilyGlycerol-3-phosphate dehydrogenase, NAD-dependentInterproscan
IPR013328Homologous_superfamily6-phosphogluconate dehydrogenase, domain 2Interproscan
IPR011128DomainGlycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminalInterproscan
IPR036291Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR011598DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan
IPR013767DomainPAS foldInterproscan
IPR035965Homologous_superfamilyPAS domain superfamilyInterproscan
IPR000014DomainPAS domainInterproscan
IPR001067FamilyNuclear translocatorInterproscan
IPR036638Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan
IPR001610RepeatPAC motifInterproscan
IPR042319FamilyGlycoprotein integral membrane protein 1Interproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR015947Homologous_superfamilyPUA-like superfamilyInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR046336Homologous_superfamilyLon protease, N-terminal domain superfamilyInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR003111DomainLon protease, N-terminal domainInterproscan
IPR018957DomainZinc finger, C3HC4 RING-typeInterproscan
IPR029703FamilyDNA polymerase epsilon catalytic subunitInterproscan
IPR013697DomainDNA polymerase epsilon, catalytic subunit A, C-terminalInterproscan
IPR017942DomainLipid-binding serum glycoprotein, N-terminalInterproscan
IPR001124DomainLipid-binding serum glycoprotein, C-terminalInterproscan
IPR017943Homologous_superfamilyBactericidal permeability-increasing protein, alpha/beta domain superfamilyInterproscan
IPR032942FamilyBPI/LBP/Plunc familyInterproscan
IPR021429FamilyMediator complex, subunit Med24,Interproscan
IPR001849DomainPleckstrin homology domainInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12243MADF DOMAIN TRANSCRIPTION FACTORInterproscan
PTHR11728GLYCEROL-3-PHOSPHATE DEHYDROGENASEInterproscan
PTHR23043HYPOXIA-INDUCIBLE FACTOR 1 ALPHAInterproscan
PTHR28549GLYCOPROTEIN INTEGRAL MEMBRANE PROTEIN 1Interproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR23327RING FINGER PROTEIN 127Interproscan
PTHR10670DNA POLYMERASE EPSILON CATALYTIC SUBUNIT AInterproscan
PTHR46601ULP_PROTEASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR10504BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATEDInterproscan
PTHR12898MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 24Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0047952Molecular Functionglycerol-3-phosphate dehydrogenase [NAD(P)+] activityInterproscan
GO:0006072Biological Processglycerol-3-phosphate metabolic processInterproscan
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptorInterproscan
GO:0046168Biological Processglycerol-3-phosphate catabolic processInterproscan
GO:0051287Molecular FunctionNAD bindingInterproscan
GO:0004367Molecular Functionglycerol-3-phosphate dehydrogenase [NAD(P)+] activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006116Biological ProcessNADH oxidationInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0000977Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0000278Biological Processmitotic cell cycleInterproscan
GO:0003887Molecular FunctionDNA-directed DNA polymerase activityInterproscan
GO:0006260Biological ProcessDNA replicationInterproscan
GO:0006272Biological Processleading strand elongationInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006287Biological Processbase-excision repair, gap-fillingInterproscan
GO:0006297Biological Processnucleotide-excision repair, DNA gap fillingInterproscan
GO:0008310Molecular Functionsingle-stranded DNA 3'-5' DNA exonuclease activityInterproscan
GO:0008622Cellular Componentepsilon DNA polymerase complexInterproscan
GO:0045004Biological ProcessDNA replication proofreadingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0008289Molecular Functionlipid bindingInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0003712Molecular Functiontranscription coregulator activityInterproscan
GO:0016592Cellular Componentmediator complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08268HIF1A; hypoxia-inducible factor 1 alpha-Others-deepkoala
Transcription factorsko03000deepkoala

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