Gene detail

Detailed information of g4643.t1 in Acropora digitifera

Genomic Location: chr2Alt:30286097...30287334
NR annotation: XP_015760408.1, PREDICTED: transmembrane protein 163-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F2Z4R5	Transmembrane protein 163b OS=Danio rerio OX=7955 GN=tmem163b PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01545 all species →	Cation_efflux	Cation efflux family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026765 all species →	Family	Transmembrane protein 163	Interproscan
IPR002524 all species →	Family	Cation efflux protein	Interproscan
IPR027469 all species →	Homologous_superfamily	Cation efflux transmembrane domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31937 all species →	TRANSMEMBRANE PROTEIN 163	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0006812 all species →	Biological Process	monoatomic cation transport	Interproscan
GO:0008324 all species →	Molecular Function	monoatomic cation transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14694	SLC30A11, ZNT11; solute carrier family 30 (zinc transporter), member 11	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g4643.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

22.9Max TPM

8.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	7.96	22.85

Per sample · hover a bar for the full sample record

Show the sample table (39 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	22.85
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	16.41
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	16.30
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	15.50
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	14.35
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	11.73
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	9.98
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	8.97
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	8.76
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	8.60
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	8.41
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	8.10
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	7.84
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	7.51
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	7.48
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	7.41
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	7.32
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	7.25
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	7.22
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	7.11
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	6.89
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	6.63
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	6.56
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	6.50
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	6.43
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	6.40
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	5.97
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	5.87
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	5.85
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	5.42
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	5.40
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	5.33
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	5.02
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	4.35
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	4.22
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	3.95
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	3.94
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	3.84
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	2.67

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.