Detailed information of g468.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_033111184.1, hydroxymethylglutaryl-CoA synthase 1-like [Anneissia japonica]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P23228Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Gallus gallus OX=9031 GN=HMGCS1 PE=1 SV=1
Q01581Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Homo sapiens OX=9606 GN=HMGCS1 PE=1 SV=2
Q5R7Z9Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Pongo abelii OX=9601 GN=HMGCS1 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF12937F-box-likeF-box-likeDomainInterproscan
PF12894ANAPC4_WD40Anaphase-promoting complex subunit 4 WD40 domainRepeatInterproscan
PF00108Thiolase_NThiolase, N-terminal domainDomainInterproscan
PF00493MCMMCM P-loop domainDomainInterproscan
PF17207MCM_OBMCM OB domainDomainInterproscan
PF17855MCM_lidMCM AAA-lid domainDomainInterproscan
PF01400AstacinAstacin (Peptidase family M12A)DomainInterproscan
PF00595PDZPDZ domainDomainInterproscan
PF01154HMG_CoA_synt_NHydroxymethylglutaryl-coenzyme A synthase N terminalDomainInterproscan
PF08540HMG_CoA_synt_CHydroxymethylglutaryl-coenzyme A synthase C terminalDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF14738CFAP91Cilia- and flagella-associated protein 91DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR045245FamilyPre-mRNA 3' end processing protein Pfs2-likeInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR001810DomainF-box domainInterproscan
IPR036047Homologous_superfamilyF-box-like domain superfamilyInterproscan
IPR024977DomainAnaphase-promoting complex subunit 4-like, WD40 domainInterproscan
IPR011047Homologous_superfamilyQuinoprotein alcohol dehydrogenase-like superfamilyInterproscan
IPR016039Homologous_superfamilyThiolase-likeInterproscan
IPR020616DomainThiolase, N-terminalInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001208DomainMCM domainInterproscan
IPR031327FamilyMini-chromosome maintenance proteinInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR018525Conserved_siteMini-chromosome maintenance, conserved siteInterproscan
IPR008050FamilyDNA replication licensing factor Mcm7Interproscan
IPR033762DomainMCM OB domainInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR041562DomainMCM, AAA-lid domainInterproscan
IPR034035DomainAstacin-like metallopeptidase domainInterproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR006026DomainPeptidase, metallopeptidaseInterproscan
IPR001506DomainPeptidase M12AInterproscan
IPR001478DomainPDZ domainInterproscan
IPR036034Homologous_superfamilyPDZ superfamilyInterproscan
IPR051844FamilySensory Perception USH2 Complex ProteinInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR010122FamilyHydroxymethylglutaryl-CoA synthase, eukaryoticInterproscan
IPR013528DomainHydroxymethylglutaryl-coenzyme A synthase, N-terminalInterproscan
IPR013746DomainHydroxymethylglutaryl-coenzyme A synthase, C-terminal domainInterproscan
IPR051320FamilyViral Replication and Maturation PolyproteinInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR026720FamilyCilia- and flagella-associated protein 91Interproscan
IPR032840DomainCFAP91 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22836WD40 REPEAT PROTEINInterproscan
PTHR44163U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 4 HOMOLOGInterproscan
PTHR18919ACETYL-COA C-ACYLTRANSFERASEInterproscan
PTHR11630DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBERInterproscan
PTHR10127DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAININGInterproscan
PTHR23116PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR433233-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASEInterproscan
PTHR33064POL PROTEINInterproscan
PTHR22455UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005847Cellular ComponentmRNA cleavage and polyadenylation specificity factor complexInterproscan
GO:0006378Biological Processobsolete mRNA polyadenylationInterproscan
GO:0031124Biological ProcessmRNA 3'-end processingInterproscan
GO:0000462Biological Processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0030686Cellular Component90S preribosomeInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan
GO:0034455Cellular Componentt-UTP complexInterproscan
GO:0016746Molecular Functionacyltransferase activityInterproscan
GO:0003985Molecular Functionacetyl-CoA C-acetyltransferase activityInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0006635Biological Processfatty acid beta-oxidationInterproscan
GO:0016747Molecular Functionacyltransferase activity, transferring groups other than amino-acyl groupsInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0032508Biological ProcessDNA duplex unwindingInterproscan
GO:0000727Biological Processdouble-strand break repair via break-induced replicationInterproscan
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006268Biological ProcessDNA unwinding involved in DNA replicationInterproscan
GO:0006270Biological ProcessDNA replication initiationInterproscan
GO:0006271Biological ProcessDNA strand elongation involved in DNA replicationInterproscan
GO:0017116Molecular Functionsingle-stranded DNA helicase activityInterproscan
GO:0042555Cellular ComponentMCM complexInterproscan
GO:0006260Biological ProcessDNA replicationInterproscan
GO:0003678Molecular FunctionDNA helicase activityInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0004421Molecular Functionhydroxymethylglutaryl-CoA synthase activityInterproscan
GO:0008299Biological Processisoprenoid biosynthetic processInterproscan
GO:0006084Biological Processacetyl-CoA metabolic processInterproscan
GO:0010142Biological Processfarnesyl diphosphate biosynthetic process, mevalonate pathwayInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14548UTP4, CIRH1A; U3 small nucleolar RNA-associated protein 4-PPAR signaling pathwayko03320deepkoala
Cilium and associated proteinsko03037deepkoala
Messenger RNA biogenesisko03019deepkoala
DNA replication proteinsko03032deepkoala
Ribosome biogenesisko03009deepkoala

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