Detailed information of g470.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_020632916.1, RNA polymerase I-specific transcription initiation factor RRN3-like isoform X2 [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9NYV6RNA polymerase I-specific transcription initiation factor RRN3 OS=Homo sapiens OX=9606 GN=RRN3 PE=1 SV=1
B2RS91RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus OX=10090 GN=Rrn3 PE=1 SV=1
Q5R4N9RNA polymerase I-specific transcription initiation factor RRN3 OS=Pongo abelii OX=9601 GN=RRN3 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20770PAN2_NPAN2 N-terminalRepeatInterproscan
PF05327RRN3RNA polymerase I specific transcription initiation factor RRN3RepeatInterproscan
PF17216Rrp44_CSD1Rrp44-like cold shock domainDomainInterproscan
PF02269TFIID-18kDaTranscription initiation factor IID, 18kD subunitDomainInterproscan
PF01593Amino_oxidaseFlavin containing amine oxidoreductaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050785FamilyPAN2-PAN3 complex catalytic subunitInterproscan
IPR048841DomainPAN2-PAN3 deadenylation complex catalytic subunit PAN2, N-terminalInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR007991FamilyRNA polymerase I specific transcription initiation factor RRN3Interproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR050180FamilyRNR RibonucleaseInterproscan
IPR033771DomainRrp44-like cold shock domainInterproscan
IPR003195FamilyTranscription initiation factor IID, subunit 13Interproscan
IPR009072Homologous_superfamilyHistone-foldInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR050464FamilyZeta Carotene Desaturase and Related OxidoreductasesInterproscan
IPR002937DomainAmine oxidaseInterproscan
IPR036188Homologous_superfamilyFAD/NAD(P)-binding domain superfamilyInterproscan
IPR028994Homologous_superfamilyIntegrin alpha, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15728DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2Interproscan
PTHR12790TRANSCRIPTION INITIATION FACTOR IA RRN3Interproscan
PTHR23355RIBONUCLEASEInterproscan
PTHR11380TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATEDInterproscan
PTHR42923PROTOPORPHYRINOGEN OXIDASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000289Biological Processnuclear-transcribed mRNA poly(A) tail shorteningInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0004535Molecular Functionpoly(A)-specific ribonuclease activityInterproscan
GO:0031251Cellular ComponentPAN complexInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0001181Molecular FunctionRNA polymerase I general transcription initiation factor activityInterproscan
GO:0006361Biological Processtranscription initiation at RNA polymerase I promoterInterproscan
GO:0001042Molecular FunctionRNA polymerase I core bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0000175Molecular Function3'-5'-RNA exonuclease activityInterproscan
GO:0000177Cellular Componentcytoplasmic exosome (RNase complex)Interproscan
GO:0016075Biological ProcessrRNA catabolic processInterproscan
GO:0006366Biological Processtranscription by RNA polymerase IIInterproscan
GO:0046982Molecular Functionprotein heterodimerization activityInterproscan
GO:0005669Cellular Componenttranscription factor TFIID complexInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03127TAF13; transcription initiation factor TFIID subunit 13-Transcription machineryko03021deepkoala
Transcription machineryko03021deepkoala

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