Detailed information of g472.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAB4040640.1, 28S ribosomal S11, mitochondrial, partial [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
B9DM52Small ribosomal subunit protein uS11 OS=Staphylococcus carnosus (strain TM300) OX=396513 GN=rpsK PE=3 SV=1
Q49ZE3Small ribosomal subunit protein uS11 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=rpsK PE=3 SV=1
A7X5C5Small ribosomal subunit protein uS11 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) OX=418127 GN=rpsK PE=3 SV=1
Gene familySubfamily
Transcription Factors FamilySRF

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00411Ribosomal_S11Ribosomal protein S11FamilyInterproscan
PF12347HJURP_CHolliday junction regulator protein family C-terminal repeatDomainInterproscan
PF00319SRF-TFSRF-type transcription factor (DNA-binding and dimerisation domain)DomainInterproscan
PF00226DnaJDnaJ domainDomainInterproscan
PF000017tm_17 transmembrane receptor (rhodopsin family)FamilyInterproscan
PF15739TSNAXIP1_NTranslin-associated factor X-interacting N-terminusFamilyInterproscan
PF03029ATP_bind_1Conserved hypothetical ATP binding proteinDomainInterproscan
PF10498IFT57Intra-flagellar transport protein 57 FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018102Conserved_siteSmall ribosomal subunit protein uS11, conserved siteInterproscan
IPR001971FamilySmall ribosomal subunit protein uS11Interproscan
IPR036967Homologous_superfamilySmall ribosomal subunit protein uS11 superfamilyInterproscan
IPR002100DomainTranscription factor, MADS-boxInterproscan
IPR036879Homologous_superfamilyTranscription factor, MADS-box superfamilyInterproscan
IPR050142FamilyMADS-box/MEF2 Transcription FactorInterproscan
IPR022102DomainHolliday junction regulator protein family C-terminalInterproscan
IPR036869Homologous_superfamilyChaperone J-domain superfamilyInterproscan
IPR001623DomainDnaJ domainInterproscan
IPR000276FamilyG protein-coupled receptor, rhodopsin-likeInterproscan
IPR017452DomainGPCR, rhodopsin-like, 7TMInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR032755DomainTranslin-associated factor X-interacting protein 1, N-terminalInterproscan
IPR004130FamilyGPN-loop GTPaseInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR019530FamilyIntra-flagellar transport protein 57Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46704CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR1175940S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11Interproscan
PTHR48019SERUM RESPONSE FACTOR HOMOLOGInterproscan
PTHR24243G-PROTEIN COUPLED RECEPTORInterproscan
PTHR47501TRANSPOSASE-RELATEDInterproscan
PTHR21231XPA-BINDING PROTEIN 1-RELATEDInterproscan
PTHR16011IFT57/HIPPIInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0005763Cellular Componentmitochondrial small ribosomal subunitInterproscan
GO:0032543Biological Processmitochondrial translationInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005794Cellular ComponentGolgi apparatusInterproscan
GO:0005813Cellular ComponentcentrosomeInterproscan
GO:0005929Cellular ComponentciliumInterproscan
GO:0030992Cellular Componentintraciliary transport particle BInterproscan
GO:0042073Biological Processintraciliary transportInterproscan
GO:1905515Biological Processnon-motile cilium assemblyInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09260MEF2A; MADS-box transcription enhancer factor 2A-Ribosomeko03011deepkoala
Cilium and associated proteinsko03037deepkoala
G protein-coupled receptorsko04030deepkoala
Transcription factorsko03000deepkoala

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