Detailed information of g473.t1 in Acropora digitifera

Genomic Location: chr1Alt:6309822...6328217
NR annotation: XP_029213563.2, protein O-mannosyl-transferase TMTC2-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6DCD5Protein O-mannosyl-transferase tmtc2 OS=Xenopus laevis OX=8355 GN=tmtc2 PE=2 SV=1
Q5T4D3Protein O-mannosyl-transferase TMTC4 OS=Homo sapiens OX=9606 GN=TMTC4 PE=1 SV=2
Q8BG19Protein O-mannosyl-transferase TMTC4 OS=Mus musculus OX=10090 GN=Tmtc4 PE=2 SV=1
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14559
all species →		TPR_19Tetratricopeptide repeatRepeatInterproscan
PF13432
all species →		TPR_16Tetratricopeptide repeatRepeatInterproscan
PF07719
all species →		TPR_2Tetratricopeptide repeatRepeatInterproscan
PF08409
all species →		TMTC_DUF1736Protein O-mannosyl-transferase TMTC, DUF1736FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019734
all species →		RepeatTetratricopeptide repeatInterproscan
IPR013105
all species →		RepeatTetratricopeptide repeat 2Interproscan
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR013618
all species →		DomainProtein O-mannosyl-transferase TMTC, DUF1736Interproscan
IPR052384
all species →		FamilyO-mannosyl-transferase TMTCInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44216
all species →		PROTEIN O-MANNOSYL-TRANSFERASE TMTC2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000030
all species →		Molecular Functionmannosyltransferase activityInterproscan
GO:0005789
all species →		Cellular Componentendoplasmic reticulum membraneInterproscan
GO:0035269
all species →		Biological Processprotein O-linked mannosylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g473.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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