Gene detail

Detailed information of g4752.t1 in Acropora digitifera

Genomic Location: chr2Alt:31751074...31757851
NR annotation: BAX00663.1, fluorescent protein [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95P04	GFP-like non-fluorescent chromoprotein OS=Goniopora tenuidens OX=75301 PE=1 SV=1
P83690	GFP-like non-fluorescent chromoprotein OS=Montipora efflorescens OX=105610 PE=1 SV=2
Q9U6Y8	Red fluorescent protein drFP583 OS=Discosoma sp. OX=86600 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01353 all species →	GFP	Green fluorescent protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009017 all species →	Homologous_superfamily	Green fluorescent protein	Interproscan
IPR000786 all species →	Family	Green fluorescent protein, GFP	Interproscan
IPR011584 all species →	Family	Green fluorescent protein-related	Interproscan

PANTHER

No PANTHER signature was recorded for g4752.t1 in Acropora digitifera.

Gene Ontology

GO term	Category	Description	Source
GO:0006091 all species →	Biological Process	generation of precursor metabolites and energy	Interproscan
GO:0008218 all species →	Biological Process	bioluminescence	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g4752.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g4752.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

228.8Max TPM

39.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	39.55	228.84

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	228.84
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	226.81
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	97.43
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	93.03
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	75.96
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	71.24
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	64.00
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	60.13
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	45.11
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	41.39
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	37.46
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	37.35
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	35.71
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	35.35
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	31.36
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	29.76
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	28.81
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	26.99
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	25.02
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	24.94
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	24.24
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	22.61
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	20.45
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	18.78
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	16.26
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	15.60
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	12.46
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	11.87
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	11.47
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	10.86
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	10.85
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	10.81
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	10.38
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	8.07
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	6.40
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	5.11
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	3.69
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	3.55
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	2.45

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.