Gene detail

Detailed information of g477.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_015775331.1, PREDICTED: tctex1 domain-containing protein 1-B-like [Acropora digitifera]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D5I4	Dynein light chain Tctex-type 5 OS=Mus musculus OX=10090 GN=Dynlt5 PE=2 SV=1
Q8N7M0	Dynein light chain Tctex-type 5 OS=Homo sapiens OX=9606 GN=DYNLT5 PE=1 SV=2
Q9K9H0	Isocitrate lyase OS=Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=aceA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000000 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000001 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000223 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000262 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000460 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000552 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002885 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003173 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004891 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006371 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006495 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0015522 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00463 all species →	ICL	Isocitrate lyase family	Domain	Interproscan
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF10421 all species →	OAS1_C	2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus	Domain	Interproscan
PF00274 all species →	Glycolytic	Fructose-bisphosphate aldolase class-I	Domain	Interproscan
PF00917 all species →	MATH	MATH domain	Domain	Interproscan
PF07942 all species →	CARME	Carnosine N-methyltransferase	Family	Interproscan
PF01390 all species →	SEA	SEA domain	Family	Interproscan
PF01825 all species →	GPS	GPCR proteolysis site, GPS, motif	Motif	Interproscan
PF00002 all species →	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan
PF03623 all species →	Focal_AT	Focal adhesion targeting region	Domain	Interproscan
PF01593 all species →	Amino_oxidase	Flavin containing amine oxidoreductase	Domain	Interproscan
PF04433 all species →	SWIRM	SWIRM domain	Domain	Interproscan
PF18701 all species →	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan
PF03645 all species →	Tctex-1	Tctex-1 family	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF03712 all species →	Cu2_monoox_C	Copper type II ascorbate-dependent monooxygenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039556 all species →	Domain	ICL/PEPM domain	Interproscan
IPR006254 all species →	Family	Isocitrate lyase	Interproscan
IPR015813 all species →	Homologous_superfamily	Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily	Interproscan
IPR018523 all species →	Conserved_site	Isocitrate lyase/phosphorylmutase, conserved site	Interproscan
IPR040442 all species →	Homologous_superfamily	Pyruvate kinase-like domain superfamily	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR018952 all species →	Domain	2'-5'-oligoadenylate synthetase 1, domain 2/C-terminal	Interproscan
IPR000741 all species →	Family	Fructose-bisphosphate aldolase, class-I	Interproscan
IPR002083 all species →	Domain	MATH/TRAF domain	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR029768 all species →	Conserved_site	Fructose-bisphosphate aldolase class-I active site	Interproscan
IPR008974 all species →	Homologous_superfamily	TRAF-like	Interproscan
IPR012901 all species →	Family	Carnosine N-methyltransferase	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR000082 all species →	Domain	SEA domain	Interproscan
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR036364 all species →	Homologous_superfamily	SEA domain superfamily	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR000203 all species →	Conserved_site	GPS motif	Interproscan
IPR046338 all species →	Homologous_superfamily	GAIN domain superfamily	Interproscan
IPR000832 all species →	Family	GPCR, family 2, secretin-like	Interproscan
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR036137 all species →	Homologous_superfamily	Focal adhesion kinase, targeting (FAT) domain superfamily	Interproscan
IPR005189 all species →	Domain	Focal adhesion kinase, targeting (FAT) domain	Interproscan
IPR002937 all species →	Domain	Amine oxidase	Interproscan
IPR050281 all species →	Family	Flavin monoamine oxidase and related enzymes	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR007526 all species →	Domain	SWIRM domain	Interproscan
IPR011124 all species →	Domain	Zinc finger, CW-type	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR040676 all species →	Domain	Domain of unknown function DUF5641	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR038586 all species →	Homologous_superfamily	Tctex-1-like superfamily	Interproscan
IPR005334 all species →	Family	Dynein light chain Tctex-1 like	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR024548 all species →	Domain	Copper type II ascorbate-dependent monooxygenase, C-terminal	Interproscan
IPR008977 all species →	Homologous_superfamily	PHM/PNGase F domain superfamily	Interproscan
IPR014784 all species →	Homologous_superfamily	Copper type II, ascorbate-dependent monooxygenase-like, C-terminal	Interproscan
IPR000945 all species →	Family	Dopamine beta-hydroxylase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21631 all species →	ISOCITRATE LYASE/MALATE SYNTHASE	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR11627 all species →	FRUCTOSE-BISPHOSPHATE ALDOLASE	Interproscan
PTHR12303 all species →	UNCHARACTERIZED	Interproscan
PTHR45692 all species →	G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR46221 all species →	FERM AND PDZ DOMAIN-CONTAINING PROTEIN FAMILY MEMBER	Interproscan
PTHR10742 all species →	FLAVIN MONOAMINE OXIDASE	Interproscan
PTHR22955 all species →	RETROTRANSPOSON	Interproscan
PTHR21255 all species →	T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN	Interproscan
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan
PTHR10157 all species →	DOPAMINE BETA HYDROXYLASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004451 all species →	Molecular Function	isocitrate lyase activity	Interproscan
GO:0019752 all species →	Biological Process	carboxylic acid metabolic process	Interproscan
GO:0004332 all species →	Molecular Function	fructose-bisphosphate aldolase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006096 all species →	Biological Process	glycolytic process	Interproscan
GO:0030388 all species →	Biological Process	fructose 1,6-bisphosphate metabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008757 all species →	Molecular Function	S-adenosylmethionine-dependent methyltransferase activity	Interproscan
GO:0030735 all species →	Molecular Function	carnosine N-methyltransferase activity	Interproscan
GO:0035498 all species →	Biological Process	carnosine metabolic process	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0005925 all species →	Cellular Component	focal adhesion	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0007172 all species →	Biological Process	signal complex assembly	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005868 all species →	Cellular Component	cytoplasmic dynein complex	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0045505 all species →	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0016715 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen	Interproscan
GO:0004500 all species →	Molecular Function	dopamine beta-monooxygenase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0006589 all species →	Biological Process	octopamine biosynthetic process	Interproscan
GO:0030667 all species →	Cellular Component	secretory granule membrane	Interproscan
GO:0042420 all species →	Biological Process	dopamine catabolic process	Interproscan
GO:0042421 all species →	Biological Process	norepinephrine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01637	E4.1.3.1, aceA; isocitrate lyase	EC:4.1.3.1	Glyoxylate and dicarboxylate metabolism	ko00630	deepkoala
K19413	KDM1B, AOF1, LSD2; lysine-specific histone demethylase 1B	EC:1.-.-.-	Chromosome and associated proteins	ko03036	deepkoala
K19787	CARNMT1; carnosine N-methyltransferase	EC:2.1.1.22	Histidine metabolism	ko00340	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →