Gene detail

Detailed information of g4793.t1 in Montipora capitata

Genomic Location: Sc0000090:470568...486601
NR annotation: XP_029194913.2, uncharacterized protein LOC114960662 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g4793.t1

atgaatgcgcccgtgggaaactgtgtccgaaatactctcagtgcgtcaacactattggtggatccaagtgtgtctgccttccaggcttcaagtactatcgcgggaaatgccgagatctgtcacaacggcttggtatctattggcaagaagtactaccgagcaaatcccaagaaactgggttcgttacgtaaagatgtcattgctgcattttgggctaacactggcttctctatatacagtgttatcaagtaccaagccgtagaggggagcacagatgaattcagagagcaactcagcaacatctctgacttgatcagaaactgctctggggaaagtagcttcaaggcaacatggatgctgattgtcacttgggaacgagtctccccatatgcgtacaatgatgagcaaagcacatatcagcttgtccttgtcacaaatggaacgtcatcttacgcggtttacaactatgaagatggtggtatggaatggactcgccgtcttagacgaaagtgtgcagtaggatacgctaccaagaaaggcgattacagctatgaagaagaggactccttcagcgagaacattttcagcattgactcaaaacaatttttcgttaatggagtaaaaaggaccggcttcttctgcaaatctcttaatacaccaaacgatcctgtagagctaacaaatgaacagaagtgtatgaattggtacaacaatgaacccgacccagaaccctggttagagcaactgcgtgattgcccggcttcaagaagacatataagacgtgataatcgatacaaaagacgtacgcggaccaaggatactgaatgctatgagctaagatttcccacctcccgatttggtgcaagccaacagtgttgttattcagtcaaaagaggaagaaaaaaagatgcttttgtttccagttctcgaaagggtggaagagcttacagatatcactacaagtatggccgcctaagacgaatcttcgacgaagaaccctttgtcttttgttgcagtaagggttcagacctttgttccttgttctacgaaaaacggccgctgtccacagcagttactgttccagtgagacctcggcgttgcaattgtttctttgtcggttgtcgttgtgtaccaaggccacgccctcgacgaagattccggcgatttttcagagcctggttctttggagacccacatatctccacattggatggtctacagtacacatttaatggtcttggagactatgttttggttcgcacacttgacaatttgctgcacttacacggaagaacgttacgacctcgaacaactgagggcgaactgtccaatgccactgttttctcaggctttgccataaaaacgaacaccagtgacacagcgcagatactcttcgacgaatctcagccaggaaatcttagcataactattatactacaaaacgaaacatgtttgaatcactccattgaatattttaacgaggggcaagacttcacagatatgtcgattgaacgaagctctaccaataataacacaatcatagtatcgttcccatcgggtttttccatcgaggtgactcctggaataagacttttgcaaataacagttaatgtgaatgaggacatgatgaataaaacgcaagggcttctcggaaaattcaatggtgataaatcagatgatctgcagtatccaaatgggacaacaataccggctaacgctactgaacaagaggtgtttcatctggggcaacaatggcgtgttccagatgcagagagattgttcgtgttgtccaactgtacgccacaagatgtgttctttgacgcaaacttcgttccttctttcttaaacttctccttggtgacgcccgagattcgtgcattatgtggagacaacaaagagtgcatttacgatgtcctgactactggaaacgacgagcttggaaaggaaagtgcgggatttgagaaagaaaatcaagatctagtaaacgaattagcaaacacgccgcctgcgattcgtggtccaacagaggtgaacgtaacaataaaccagacaacacaattttatatcacagcgtctgaccccgataacgatacagttacactagagattgatgtcctcccacctggagcaaattttaacagtatgaccggtcattttgactggacgccgatcaacgcgacaaacatcactttagatttcgtcgcgacagattcaaagaacgcttcatccgtcttcacggtgattatcaacatgtgcaagtgtgaaaacgacggagagtgtgacttcttacaattagttggggacagtgctggaccccttcgtatcgttggatgtaactgtagtgaccagtttgaaggaacattttgcgagaccgaagtattggacgcatgcgctgatgagccatgttatgataatgtcacctgtacaacgctaacaaacccctatggattccagtgcgggccgtgtcccgcgggtctcacgggtgacggccaggattgttttgatatcaacgaatgccaggcagctggtgacgtgatgcataactgcacagaaaatgcctcatgcaagaatcttccaggctcgtacaattgctcgtgtaatcctgggtacgatggagacccgtactctaattgcaccgatgtaaatgaatgcacaaacggagaggctttttgctctcaaatatgtgtgaacaaaccagggacatttgagtgcttatgcaaggaaggatttcagttgtctcccaaccagctcacatgtgaagacgtaaacgagtgcatgactggaagacatgattgcagtcaggcttgtttcaacaatgaaggaagcttcatgtgtggctgtcatccgggatatcagttagtcagtgatggaaagacatgcattgatgaggatgaatgcagagatcctgttctcaataattgtagccagctgtgcaccaatgacgtaggatcatacgtttgttcatgcgaagatggattctctcttcagtcggataataccacttgtgcagatattgatgagtgcaatacaagcccatccaatgctgtgtgcaacgatgattcatgtattaatattcccggttcattccaatgccgatgccctgtacccttgatttacgtgcagggacggtgccaaggtgcattagtattcactctcagcctgacactaagagactggaatagaaggcgtgtattgtttacatcgccacttttggacaaaacatctccggagtttggtttcttggccagaggaattgagacacaatgctatcgattcttcagcagagctgggagatttaggggaagatttttacgatgcacagtgaagaggttcagagaaggaagcgtcattgcccatgtcgatctcaattttgcccaaaatgccactgacgttactctggagaccttgagaaatgagcttcctcaatcagggcagatgggaaatctaacttacgacccacaatcggcaagaatatcagatttggatgaatgcgccgacgattcgacaaacaattgccacgccaaagcgtactgcgacaacaaagatggctcatttgaatgcaaatgcaagggtggttatgttggtgacggaacggattcatgtggtaaggcaacatgttaa

Transcript

g4793.t1

ATGAATGCGCCCGTGGGAAACTGTGTCCGAAATACTCTCAGTGCGTCAACACTATTGGTGGATCCAAGTGTGTCTGCCTTCCAGGCTTCAAGTACTATCGCGGGAAATGCCGAGATCTGTCACAACGGCTTGGTATCTATTGGCAAGAAGTACTACCGAGCAAATCCCAAGAAACTGGGTTCGTTACGTAAAGATGTCATTGCTGCATTTTGGGCTAACACTGGCTTCTCTATATACAGTGTTATCAAGTACCAAGCCGTAGAGGGGAGCACAGATGAATTCAGAGAGCAACTCAGCAACATCTCTGACTTGATCAGAAACTGCTCTGGGGAAAGTAGCTTCAAGGCAACATGGATGCTGATTGTCACTTGGGAACGAGTCTCCCCATATGCGTACAATGATGAGcaaAGCACATATCAGCTTGTCCTTGTCACAAATGGAACGTCATCTTACGCGGTTTACAACTATGAAGATGGTGGTATGGAATGGACTCGCCGTCTTAGACGAAAGTGTGCAGTAGGATACGCTACCAAGAAAGGCGATTACAGCTATGAAGAAGAGGACTCCTTCAGCGAGAACATTTTCAGCATTGACtcaaaacaatttttcgttAATGGAGTAAAAAGGACCGGCTTCTTCTGCAAATCTCTTAATACACCAAACGATCCTGTAGAGCTAACAAATGAACAGAAGTGTATGAATTGGTACAACAATGAACCCGACCCAGAACCCTGGTTAGAGCAACTGCGTGATTGCCCGGCTTCAAGAAGACATATAAGACGTGATAATCGATACAAAAGACGTACGCGGACCAAGGATACTGAATGCTATGAGCTAAGATTTCCCACCTCCCGATTTGGTGCAAGCCAACAGTGTTGTTATTCAGtcaaaagaggaagaaaaaaagatgCTTTTGTTTCCAGTTCTCGAAAGGGTGGAAGAGCTTACAGATATCACTACAAGTATGGCCGCCTAAGACGAATCTTCGACGAAGAACCCTTTGTCTTTTGTTGCAGTAAGGGTTCAGACCTTTGTTCCTTGTTCTACGAAAAACGGCCGCTGTCCACAGCAGTTACTGTTCCAGTGAGACCTCGGCGTTGCAATTGTTTCTTTGTCGGTTGTCGTTGTGTACCAAGGCCACGCCCTCGACGAAGATTCCGGCGATTTTTCAGAGCCTGGTTCTTTGGAGACCCACATATCTCCACATTGGATGGTCTACAGTACACATTTAATGGTCTTGGAGACTATGTTTTGGTTCGCACACTTGACAATTTGCTGCACTTACACGGAAGAACGTTACGACCTCGAACAACTGAGGGCGAACTGTCCAATGCCACTGTTTTCTCAGGCTTTGCCATAAAAACGAACACCAGTGACACAGCGCAGATACTCTTCGACGAATCTCAGCCAGGAAATCTTAGCATAACTATTATACTACAAAACGAAACATGTTTGAATCACTCCATTGAATATTTTAACGAGGGGCAAGACTTCACAGATATGTCGATTGAACGAAGCTCTACCAATAATAACACAATCATAGTATCGTTCCCATCGGGTTTTTCCATCGAGGTGACTCCTGGAATAAGACTTTTGCAAATAACAGTTAATGTGAATGAGGACATGATGAATAAAACGCAAGGGCTTCTCGGAAAATTCAATGGTGATAAATCAGATGATCTGCAGTATCCAAATGGGACAACAATACCGGCTAACGCTACTGAACAAGAGGTGTTTCATCTGGGGCAACAATGGCGTGTTCCAGATGCAGAGAGATTGTTCGTGTTGTCCAACTGTACGCCACAAGATGTGTTCTTTGACGCAAACTTCGTTCCTTCTTTCTTAAACTTCTCCTTGGTGACGCCCGAGATTCGTGCATTATGTGGAGACAACAAAGAGTGCATTTACGATGTCCTGACTACTGGAAACGACGAGCTTGGAAAGGAAAGTGcgggatttgagaaagaaaatcAAGATCTAGTAAACGAATTAGCAAACACGCCGCCTGCGATTCGTGGTCCAACAGAGGTGAACGTAACAATAAACCAGACAACACAATTTTATATCACAGCGTCTGACCCCGATAACGATACAGTTACACTAGAGATTGATGTCCTCCCACCTGGAGCAAATTTTAACAGTATGACCGGTCATTTTGACTGGACGCCGATCAACGCGACAAACATCACTTTAGATTTCGTCGCGACAGATTCAAAGAACGCTTCATCCGTCTTCACGGTGATTATCAACATGTGCAAGTGTGAAAACGACGGAGAGTGTGACTTCTTACAATTAGTTGGGGACAGTGCTGGACCCCTTCGTATCGTTGGATGTAACTGTAGTGACCAGTTTGAAGGAACATTTTGCGAGACCGAAGTATTGGACGCATGCGCTGATGAGCCATGTTATGATAATGTCACCTGTACAACGCTAACAAACCCCTATGGATTCCAGTGCGGGCCGTGTCCCGCGGGTCTCACGGGTGACGGCCAGGATTGTTTTGATATCAACGAATGCCAGGCAGCTGGTGACGTGATGCATAACTGCACAGAAAATGCCTCATGCAAGAATCTTCCAGGCTCGTACAATTGCTCGTGTAATCCTGGGTACGATGGAGACCCGTACTCTAATTGCACCGATGTAAATGAATGCACAAACGGAGAGGCTTTTTGCTCTCAAATATGTGTGAACAAACCAGGGACATTTGAGTGCTTATGCAAGGAAGGATTTCAGTTGTCTCCCAACCAGCTCACATGTGAAGACGTAAACGAGTGCATGACTGGAAGACATGATTGCAGTCAGGCTTGTTTCAACAATGAAGGAAGCTTCATGTGTGGCTGTCATCCGGGATATCAGTTAGTCAGTGATGGAAAGACATGCATTGATGAGGATGAATGCAGAGATCCTGTTCTCAATAATTGTAGCCAGCTGTGCACCAATGACGTAGGATCATACGTTTGTTCATGCGAAGATGGATTCTCTCTTCAGTCGGATAATACCACTTGTGCAGATATTGATGAGTGCAATACAAGCCCATCCAATGCTGTGTGCAACGATGATTCATGTATTAATATTCCCGGTTCATTCCAATGCCGATGCCCTGTACCCTTGATTTACGTGCAGGGACGGTGCCAAGGTGCATTAGTATTCACTCTCAGCCTGACACTAAGAGACTGGAATAGAAGGCGTGTATTGTTTACATCGCCACTTTTGGACAAAACATCTCCGGAGTTTGGTTTCTTGGCCAGAGGAATTGAGACACAATGCTATCGATTCTTCAGCAGAGCTGGGAGATTTAGGGGAAGATTTTTACGATGCACAGTGAAGAGGTTCAGAGAAGGAAGCGTCATTGCCCATGTCGATCTCAATTTTGCCCAAAATGCCACTGACGTTACTCTGGAGACCTTGAGAAATGAGCTTCCTCAATCAGGGCAGATGGGAAATCTAACTTACGACCCACAATCGGCAAGAATATCAGATTTGGATGAATGCGCCGACGATTCGACAAACAATTGCCACGCCAAAGCGTACTGCGACAACAAAGATGGCTCATTTGAATGCAAATGCAAGGGTGGTTATGTTGGTGACGGAACGGATTCATGTGGTAAGGCAACATGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8JZM8	Mucin-4 OS=Mus musculus OX=10090 GN=Muc4 PE=2 SV=2
Q99102	Mucin-4 OS=Homo sapiens OX=9606 GN=MUC4 PE=1 SV=5
Q63661	Mucin-4 OS=Rattus norvegicus OX=10116 GN=Muc4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000210 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01390 all species →	SEA	SEA domain	Family	Interproscan
PF00094 all species →	VWD	von Willebrand factor type D domain	Domain	Interproscan
PF14670 all species →	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF05345 all species →	He_PIG	Putative Ig domain	Domain	Interproscan
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan
PF06119 all species →	NIDO	Nidogen-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR000082 all species →	Domain	SEA domain	Interproscan
IPR036364 all species →	Homologous_superfamily	SEA domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001846 all species →	Domain	von Willebrand factor, type D domain	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR050751 all species →	Family	Extracellular matrix structural protein	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR005533 all species →	Domain	AMOP domain	Interproscan
IPR003886 all species →	Domain	NIDO domain	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24034 all species →	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0007160 all species →	Biological Process	cell-matrix adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g4793.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.