Gene detail

Detailed information of g48.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_036315840.1, Na(+)-translocating NADH-quinone reductase subunit A [Methylophaga thiooxydans]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3IHR0	Na(+)-translocating NADH-quinone reductase subunit A OS=Pseudoalteromonas translucida (strain TAC 125) OX=326442 GN=nqrA PE=3 SV=1
B7VKD2	Na(+)-translocating NADH-quinone reductase subunit A OS=Vibrio atlanticus (strain LGP32) OX=575788 GN=nqrA PE=3 SV=1
Q8DBJ6	Na(+)-translocating NADH-quinone reductase subunit A OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=nqrA PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000220 (this species only)
Orthogroup (gene family)	OG0000235 (this species only)
Orthogroup (gene family)	OG0000588 (this species only)
Orthogroup (gene family)	OG0001726 (this species only)
Orthogroup (gene family)	OG0003741 (this species only)
Orthogroup (gene family)	OG0003934 (this species only)
Orthogroup (gene family)	OG0007003 (this species only)
Orthogroup (gene family)	OG0007540 (this species only)
Orthogroup (gene family)	OG0027639 (this species only)
Orthogroup (gene family)	OG0027651 (this species only)
Orthogroup (gene family)	OG0029711 (this species only)
Orthogroup (gene family)	OG0059619 (this species only)
Orthogroup (gene family)	OG0171205 (this species only)
Orthogroup (gene family)	OG0172733 (this species only)
Orthogroup (gene family)	OG0173172 (this species only)
Ubiquitin family	ULD\|UFD\|UBX · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00789 all species →	UBX	UBX domain	Domain	Interproscan
PF00028 all species →	Cadherin	Cadherin domain	Domain	Interproscan
PF05896 all species →	NQRA	Na(+)-translocating NADH-quinone reductase subunit A (NQRA)	Family	Interproscan
PF11973 all species →	NQRA_SLBB	NQRA C-terminal domain	Domain	Interproscan
PF08238 all species →	Sel1	Sel1 repeat	Repeat	Interproscan
PF01496 all species →	V_ATPase_I	V-type ATPase 116kDa subunit family	Family	Interproscan
PF04614 all species →	Pex19	Pex19 protein family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR001012 all species →	Domain	UBX domain	Interproscan
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR039808 all species →	Family	Cadherin	Interproscan
IPR008703 all species →	Family	Na(+)-translocating NADH-quinone reductase subunit A	Interproscan
IPR022615 all species →	Domain	Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain	Interproscan
IPR050767 all species →	Family	Sel1/AlgK	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR006597 all species →	Repeat	Sel1-like repeat	Interproscan
IPR002490 all species →	Family	V-type ATPase, V0 complex, 116kDa subunit family	Interproscan
IPR005049 all species →	Family	STELLO-like	Interproscan
IPR038322 all species →	Homologous_superfamily	Pex19, C-terminal domain superfamily	Interproscan
IPR006708 all species →	Family	Pex19 protein	Interproscan
IPR051320 all species →	Family	Viral Replication and Maturation Polyprotein	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46424 all species →	UBX DOMAIN-CONTAINING PROTEIN 4	Interproscan
PTHR24027 all species →	CADHERIN-23	Interproscan
PTHR37839 all species →	NA(+)-TRANSLOCATING NADH-QUINONE REDUCTASE SUBUNIT A	Interproscan
PTHR11102 all species →	SEL-1-LIKE PROTEIN	Interproscan
PTHR11629 all species →	VACUOLAR PROTON ATPASES	Interproscan
PTHR31362 all species →	GLYCOSYLTRANSFERASE STELLO1-RELATED	Interproscan
PTHR12774 all species →	PEROXISOMAL BIOGENESIS FACTOR 19	Interproscan
PTHR33064 all species →	POL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016342 all species →	Cellular Component	catenin complex	Interproscan
GO:0045296 all species →	Molecular Function	cadherin binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0098742 all species →	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan
GO:0006814 all species →	Biological Process	sodium ion transport	Interproscan
GO:0016655 all species →	Molecular Function	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0036503 all species →	Biological Process	ERAD pathway	Interproscan
GO:0033179 all species →	Cellular Component	proton-transporting V-type ATPase, V0 domain	Interproscan
GO:0046961 all species →	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007035 all species →	Biological Process	vacuolar acidification	Interproscan
GO:0016471 all species →	Cellular Component	vacuolar proton-transporting V-type ATPase complex	Interproscan
GO:0051117 all species →	Molecular Function	ATPase binding	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0005778 all species →	Cellular Component	peroxisomal membrane	Interproscan
GO:0033328 all species →	Molecular Function	peroxisome membrane targeting sequence binding	Interproscan
GO:0045046 all species →	Biological Process	protein import into peroxisome membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00346	nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A	EC:7.2.1.1	Enzymes with EC numbers	-	deepkoala
K13337	PEX19; peroxin-19	-	Peroxisome	ko04146	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.