Gene detail

Detailed information of g480.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_046574207.1, nuclear receptor 2C2-associated protein-like [Haliotis rubra]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q1ED21	Nuclear receptor 2C2-associated protein OS=Danio rerio OX=7955 GN=nr2c2ap PE=2 SV=1
Q3B8C3	Nuclear receptor 2C2-associated protein OS=Xenopus laevis OX=8355 GN=nr2c2ap PE=2 SV=1
A1L1F0	Nuclear receptor 2C2-associated protein OS=Xenopus tropicalis OX=8364 GN=nr2c2ap PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|U-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05380	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF01027	Bax1-I	Inhibitor of apoptosis-promoting Bax1	Family	Interproscan
PF14214	Helitron_like_N	Helitron helicase-like domain at N-terminus	Family	Interproscan
PF01781	Ribosomal_L38e	Ribosomal L38e protein family	Family	Interproscan
PF04564	U-box	U-box domain	Domain	Interproscan
PF04567	RNA_pol_Rpb2_5	RNA polymerase Rpb2, domain 5	Domain	Interproscan
PF04565	RNA_pol_Rpb2_3	RNA polymerase Rpb2, domain 3	Domain	Interproscan
PF02140	Gal_Lectin	Galactose binding lectin domain	Domain	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF09814	HECT_2	HECT-like Ubiquitin-conjugating enzyme (E2)-binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008042	Family	Retrotransposon, Pao	Interproscan
IPR006214	Family	Bax inhibitor 1-related	Interproscan
IPR025476	Domain	Helitron helicase-like domain	Interproscan
IPR002675	Family	Large ribosomal subunit protein eL38	Interproscan
IPR038464	Homologous_superfamily	Large ribosomal subunit protein eL38 superfamily	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR039847	Family	RING finger protein 37	Interproscan
IPR003613	Domain	U-box domain	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR039925	Domain	RNF37, RING-Ubox	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR007647	Domain	RNA polymerase Rpb2, domain 5	Interproscan
IPR037033	Homologous_superfamily	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	Interproscan
IPR007645	Domain	RNA polymerase Rpb2, domain 3	Interproscan
IPR014724	Homologous_superfamily	RNA polymerase Rpb2, OB-fold	Interproscan
IPR015712	Family	DNA-directed RNA polymerase, subunit 2	Interproscan
IPR000922	Domain	D-galactoside/L-rhamnose binding SUEL lectin domain	Interproscan
IPR043159	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan
IPR050648	Family	F-box/Leucine-rich repeat	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR019193	Family	Ubiquitin-conjugating enzyme E2-binding protein	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22955	RETROTRANSPOSON	Interproscan
PTHR23291	BAX INHIBITOR-RELATED	Interproscan
PTHR45786	DNA BINDING PROTEIN-LIKE	Interproscan
PTHR10965	60S RIBOSOMAL PROTEIN L38	Interproscan
PTHR13492	RING FINGER PROTEIN 37	Interproscan
PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	Interproscan
PTHR46780	PROTEIN EVA-1	Interproscan
PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	Interproscan
PTHR31531	E3 UBIQUITIN-PROTEIN LIGASE E3D FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0031305	Cellular Component	obsolete integral component of mitochondrial inner membrane	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0022618	Biological Process	protein-RNA complex assembly	Interproscan
GO:0022625	Cellular Component	cytosolic large ribosomal subunit	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0031625	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0034450	Molecular Function	ubiquitin-ubiquitin ligase activity	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0001056	Molecular Function	RNA polymerase III activity	Interproscan
GO:0005666	Cellular Component	RNA polymerase III complex	Interproscan
GO:0032549	Molecular Function	ribonucleoside binding	Interproscan
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000151	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006513	Biological Process	protein monoubiquitination	Interproscan
GO:0030332	Molecular Function	cyclin binding	Interproscan
GO:0031624	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0051865	Biological Process	protein autoubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02923	RP-L38e, RPL38; large subunit ribosomal protein L38e	-	Transporters	ko02000	deepkoala
			Ubiquitin system	ko04121	deepkoala
			Ribosome	ko03011	deepkoala