Gene detail

Detailed information of g4809.t1.1 in Haliclystus octoradiatus

Genomic Location: :...
NR annotation: XP_047140481.1, AP-3 complex subunit beta-1 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

g4809.t1

atggCTGCTTCGTATAATGGTGATAAAAGTTTCCAATCAactccaaatataaattttgaagaagataATGAAGCGAGTACTGGAGTTGTTGGATTCCTAACTGGTCATTTCAAAAAgcatgatgatttgaaaacaatgttaGATAGTTCAAAAGATGGAATGAAACTTGACGCAATGAAGAAAATTGTTGCgATGATGGCATCAGGACGAGATGTTTCAGAGTTGTTTCCAGCAGTTGTTAAGAACGTTGTTAGCAAAAGTATTGAGGTTAAGAAGCTTGTTTATGTTTACCTTGTACGTTATGCCGAAGAACAACAAGACCTTGCATTGCTATCTATCAGCACATTTCAAAGAGCATTGAAGGATCCTAATCAATTAATTCGTGCATCAGCAATGCGGGTTTTATCCAGCATCAGGGTACCTGTCATTGCACCAATTATGATGTTATCTTTGAAAGAGGCTGTCACTGATATGTCTCCATATGTGCGGAAGACAGCAGCAAATGCAATATCAAAGTTATACAGTCTGGACCCTGAAGAAAAGGATGTATTGATTGAAATTATTGAGAAACTGTTACAAGATAAAACAACACTTGTTGTCGGGAGTGTCGTTATGGCATTTGAAGAAGTTTGTCCTGATCGAATTGATTTAATTCATAAGAATTTCAGAAAGTTCTGCAGTATGTTAGTTGACATGGACGAATGGAGTCAAGTTGCTGTGATTAATATGTTAACAAGATATGCACGGACACAGTTTAttgatccaaataaaaatagGCTTGAAGAAAATGGCGATGAATCTGAAAAATTTTATCCAAGTTCAGAATCTGAAGGAAGTTCTTCGTCACATGAAGACGAAGAATCCAAAGAAGATAAAGCACCGTCTTATCAAATGGATTCTGACCATAGATTACTTTTACAATCTTCAAAATCACTTCTTCAAAGCAGAAATGCATCGgTTGTTATGGCAGTGGCTAAATTATACTATCATTGCGCACCAAGCCAAGAAGTTGGTTTAGTTATTAAATCCCTTGTCCGTCTACTCAGGAGTCACAGGGAAGTTCAAACTATTGTACTCAGCAATGTCGCAACAATTTCTGCTTCAAGAAAGAATCTCTTTCAACCTTACATCAAAAGCTTTTATGTCCATTCAGGAGATCCAACTCACATTCGATTATTAAAATTGGAAATCCTGACTAACATTGCCACAGAAAGCAACATATCAGTAATATTACGAGAATTTCAGACATATGTTACGAGTTCAGATAAAACATTTGCTGCGTCAACTATTCAAGCAATCGGTAGATGTGCATCAAACATTGCAGAAGTTACTGATACATGTTTGTCTGGTTTAGTTCGACTTCTATCTAATCGAGAAGAGGCTGTTGTTGCGGAAAGTGTTGTCGTTATCAAGAAGCTATTGCAACTACAACCAAAAGGTCATTCAGAGATTCTAAGTCACATGGTGAAATTACTTGACAAGATTAATATACCTATGGCACGTGCTAGTATTCTATGGCTGGTGGGTGAATATTCTGATTGGATACCTAAACTTGGGCCTGATGTACTACGCATTGCCGCAAAGTCTTTCACAACAGAGGATGACATTGTCAAACTTCAAACTCTTAATCTTGCCGCAAAGTTGTACCTTACAAATCCAAAACAGaCAAAATTGTTAGCTCAGTATGTGCTACAGTTATCAAAATACgatcaaaattatgatattcgtGATAGAGCTCGTTATCTGAAGTTTTTCCTATTTGCAAATGAAAACCAAGAGGGTGCTAGCCTACGGAAGAAAGCAAAGAAATTTTTCTTAGTAAAAAAACCCGCTCCTGTCCTGACATCAGTTTTTCACGAGCATGGCAACTTTCAAATCGGTTCCTTGTCCCACATGCTCAATGCCAAAGCTAATGGATACCAAGAACTTCCTGACTTCCCTGGAGTGCAGCCAGATTCATCCGCAAGAAATGTTGTTGTTGAATCAAGTTGGGATACAACATCGTTAGTACAGAAATCaagtaaaagtaaaaagaaatCCTCATTCTATTCAGATTCTGAAGAAGAATCTGGCAGCGAAGAGGATAGTGAATCTGGATCTGATGACGAATCAGGATCGGGTTCTGGATCCTATTCGGATGAAAGCGAAGAAGAAAGTAGCGAAGAAGAAAGCAGTGAAGACGATGATTCTGATTCTGGTACAGAAACAAAAGTGGCTGTCCTATCAGATGCGAGTAAATCAGACGAAGAAACGAGTGAAGAGTCAGATGATTCAGACGAAGAAAGCGATTCAGATGAAGACCAAAACACAACAGTTTCACCAAAACAGAATGGTAGACATGCATCATCAATTGCGGATGCACGAGATCATCAATCGTATGATCAGTTACTTGATCTTGATGATTTTGGTAGTTCTAGTTTACCATCGGCAATTTCACCCGCTCCAGTTCTTACGCCCTCTTTGGCATCAGATATAGAGGCATTATCTATAAACCCAGCAGCATCACAAACAACTCCAAATATGGCtGCTTCAACATCTGGTTTGAAAACATATGAATTACTTAATAAAATATCGGGTCAAGGTCTTTTGATTACTTACAAATTTACACGTAGCCCTTGTATTTATGGTCGTAATTTGGTAGCAATTGAGTTAACGTTGACAAACACACAAAATACTGAAATTTCTAATATCCATATTAGTAACAAGAAATTGCCATCTGGTATTGACCTTCATGAGTTTCCTGAAGTTGCTAAACTTGCACCAAGTCAAACTGTTACCACCCATATTGGTATTGATTTTAAAGATACAATTCAACCAGCCAAATTTGATATCAGTACATTGACTCGTAATTTCACTGTTGGTTTGAAACCAATCGTTGGTGAACTGGTACAAACACTTGTAATGTCTGACAGTGAATTTACAATTGAACAAGGAAAACTCACTGGAATGAATGAATGTACTTTGAAATATCAAACTGCGGATACCAAACAATCAATTGTATCACTTGTTGAATCTTGCGTAGCTGCGGCACCTCTTCAGTCAAGTGGAAATGACACAGAAAAGATTTATAGGTTTTCTGGTAAATTAATATCATCTGGCATGTTACTATTAATTACTGTGAAATGGTTACCAGTTCCCAATGAAAGTGCAGTCACAGTGAATTGTGAAAAAATTTCTGTTGGTTCATTATTGGcaaaagaattgaaaaataaattagcaaaagGAATGGATTCTGCGGTGGAATATAATTCTACTTGTGAAGAGCAATATTCGACATGTGCCAGATATTCTACAGAATACGATGTGACAATTGAAAATCTTTTACCTGAATTACCTATGGAGATTTTCAATAATGATGAAATACGAATGTTATCTATCGGATCAGGAGATGGACAGTTTGATctaatgtttataaaatctTTGGTGGAAAAAATTGGAAATGATAAATCATATTCATATATCTGCGTTGAACCCAATAAAGAATGTAACTTGAAATTTAATGAAACagtaaaatctgaaaaatttgattttatgaaaaatgtcTCCTTGGAAACAAACACACAGAAATTTGAAGATTATTTATCAACTTGggataataaaaaatttcatctaattatattttctCATTCGATTGGAAGCATGAGTCGAAAAGATGAAATGTTACCAAAAATTGTTCAAGATTTATTGTATGAAAATGGtaaatgtattattgtaaatatgtCCCCCGATTAtggaattcaaaaattctttgTTGAGTCTATGAAAATTGACAGTGAAGATTGCCCAAAAGAATTTTTAGAATCAAATTGTGATTCTTGTGAAATCAAACCGATCAATACGATTATACGTAATCTTGGATTAAAGCATAAAGAATTAGTTTTTGATGGTTACATTGAccttacaaaatgttttgaccCATTATCTATTGATGGAAATTTAATGTTAGATATGTTACTTTTCATTTCTTATGCACGCCGTGATGTAAAAAAAGAAGTCTTTCAAAAGAAActtgaattattaaataattcttgCGAAGTCAAAGATGGTCGTAAATTGCTGAAATCAAAGCTTATCTCTATTATTATCCAAAAGcattaa

Transcript

g4809.t1

Protein

Uniprot

Uniprot term	Description
Q7YRF1	AP-3 complex subunit beta-1 OS=Canis lupus familiaris OX=9615 GN=AP3B1 PE=2 SV=1
Q13367	AP-3 complex subunit beta-2 OS=Homo sapiens OX=9606 GN=AP3B2 PE=1 SV=2
Q9JME5	AP-3 complex subunit beta-2 OS=Mus musculus OX=10090 GN=Ap3b2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01602	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan
PF14796	AP3B1_C	Clathrin-adaptor complex-3 beta-1 subunit C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026739	Family	AP complex subunit beta	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR002553	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR029390	Domain	AP-3 complex subunit beta, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11134	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0030117	Cellular Component	membrane coat	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12397	AP3B; AP-3 complex subunit beta	-	Membrane trafficking	ko04131	deepkoala