Gene detail

Detailed information of g481.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_013411498.1, GTP-binding protein Rit1 isoform X1 [Lingula anatina]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P70425	GTP-binding protein Rit2 OS=Mus musculus OX=10090 GN=Rit2 PE=1 SV=1
Q99578	GTP-binding protein Rit2 OS=Homo sapiens OX=9606 GN=RIT2 PE=1 SV=1
Q5BJQ5	GTP-binding protein Rit2 OS=Rattus norvegicus OX=10116 GN=Rit2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000047 (this species only)
Orthogroup (gene family)	OG0000178 (this species only)
Orthogroup (gene family)	OG0000339 (this species only)
Orthogroup (gene family)	OG0000529 (this species only)
Orthogroup (gene family)	OG0001189 (this species only)
Orthogroup (gene family)	OG0002907 (this species only)
Orthogroup (gene family)	OG0007828 (this species only)
Orthogroup (gene family)	OG0008748 (this species only)
Orthogroup (gene family)	OG0027651 (this species only)
Orthogroup (gene family)	OG0059828 (this species only)
Orthogroup (gene family)	OG0170936 (this species only)
Orthogroup (gene family)	OG0171079 (this species only)
Orthogroup (gene family)	OG0171506 (this species only)
Orthogroup (gene family)	OG0171926 (this species only)
Orthogroup (gene family)	OG0173312 (this species only)
Transcription factor family	ZBTB · all TF in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan
PF07707 all species →	BACK	BTB And C-terminal Kelch	Domain	Interproscan
PF00002 all species →	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan
PF05915 all species →	TMEM_230_134	Transmembrane proteins 230/134	Family	Interproscan
PF00560 all species →	LRR_1	Leucine Rich Repeat	Repeat	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00850 all species →	Hist_deacetyl	Histone deacetylase domain	Domain	Interproscan
PF00071 all species →	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR011705 all species →	Domain	BTB/Kelch-associated	Interproscan
IPR017096 all species →	Family	BTB-kelch protein	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR053231 all species →	Family	G-protein coupled receptor LN-TM7	Interproscan
IPR000832 all species →	Family	GPCR, family 2, secretin-like	Interproscan
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR008590 all species →	Family	Transmembrane protein 230/134	Interproscan
IPR044234 all species →	Family	Transmembrane protein 230	Interproscan
IPR020825 all species →	Homologous_superfamily	Phenylalanyl-tRNA synthetase-like, B3/B4	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR050216 all species →	Family	Leucine-rich repeat domain-containing protein	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR003496 all species →	Family	ABA/WDS induced protein	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR023696 all species →	Homologous_superfamily	Ureohydrolase domain superfamily	Interproscan
IPR050284 all species →	Family	Histone deacetylase and polyamine deacetylase	Interproscan
IPR023801 all species →	Domain	Histone deacetylase domain	Interproscan
IPR000286 all species →	Family	Histone deacetylase family	Interproscan
IPR037138 all species →	Homologous_superfamily	Histone deacetylase domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR020849 all species →	Family	Small GTPase, Ras-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45632 all species →	LD33804P	Interproscan
PTHR45902 all species →	LATROPHILIN RECEPTOR-LIKE PROTEIN A	Interproscan
PTHR15664 all species →	C20ORF30 PROTEIN	Interproscan
PTHR48051 all species →	-	Interproscan
PTHR33801 all species →	ABSCISIC STRESS-RIPENING PROTEIN 5	Interproscan
PTHR24039 all species →	FIBRILLIN-RELATED	Interproscan
PTHR10625 all species →	HISTONE DEACETYLASE HDAC1-RELATED	Interproscan
PTHR24070 all species →	RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0004407 all species →	Molecular Function	histone deacetylase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016575 all species →	Biological Process	obsolete histone deacetylation	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005516 all species →	Molecular Function	calmodulin binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0007265 all species →	Biological Process	Ras protein signal transduction	Interproscan
GO:0019003 all species →	Molecular Function	GDP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07833	RIT2, RIN; Ras-like without CAAX 2	-	GTP-binding proteins	ko04031	deepkoala
K26497	TMEM230; transmembrane protein 230	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.