Gene detail

Detailed information of g483.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047144562.1, uncharacterized protein LOC100203132 isoform X3 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B8JI71	Protein eyes shut homolog OS=Danio rerio OX=7955 GN=eys PE=1 SV=2
Q5SWD9	Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus OX=10090 GN=Tsr1 PE=1 SV=1
Q5XGY1	Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis OX=8355 GN=tsr1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0001041 (this species only)
Orthogroup (gene family)	OG0001573 (this species only)
Orthogroup (gene family)	OG0001844 (this species only)
Orthogroup (gene family)	OG0001941 (this species only)
Orthogroup (gene family)	OG0002015 (this species only)
Orthogroup (gene family)	OG0002350 (this species only)
Orthogroup (gene family)	OG0003509 (this species only)
Orthogroup (gene family)	OG0004428 (this species only)
Orthogroup (gene family)	OG0008413 (this species only)
Orthogroup (gene family)	OG0015709 (this species only)
Orthogroup (gene family)	OG0029684 (this species only)
Orthogroup (gene family)	OG0048347 (this species only)
Orthogroup (gene family)	OG0080564 (this species only)
Orthogroup (gene family)	OG0171044 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04950 all species →	RIBIOP_C	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal	Family	Interproscan
PF08142 all species →	AARP2CN	AARP2CN (NUC121) domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00112 all species →	Peptidase_C1	Papain family cysteine protease	Domain	Interproscan
PF13385 all species →	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF09772 all species →	Tmem26	Transmembrane protein 26	Family	Interproscan
PF06565 all species →	DM10_dom	DM10 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026205 all species →	Family	Progesterone-induced-blocking factor 1	Interproscan
IPR030387 all species →	Domain	Bms1/Tsr1-type G domain	Interproscan
IPR007034 all species →	Domain	Ribosome biogenesis protein BMS1/TSR1, C-terminal	Interproscan
IPR012948 all species →	Domain	AARP2CN	Interproscan
IPR039761 all species →	Family	Ribosome biogenesis protein Bms1/Tsr1	Interproscan
IPR038081 all species →	Homologous_superfamily	CalX-like domain superfamily	Interproscan
IPR026919 all species →	Family	Adhesion G-protein coupled receptor V1	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR013128 all species →	Family	Peptidase C1A	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR000668 all species →	Domain	Peptidase C1A, papain C-terminal	Interproscan
IPR025660 all species →	Active_site	Cysteine peptidase, histidine active site	Interproscan
IPR025661 all species →	Active_site	Cysteine peptidase, asparagine active site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR051830 all species →	Family	Neurogenic locus notch homolog	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR019169 all species →	Family	Transmembrane protein 26	Interproscan
IPR006602 all species →	Domain	DM10 domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR040193 all species →	Family	EF-hand domain-containing protein EFHC1/EFHC2/EFHB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18950 all species →	PROGESTERONE-INDUCED BLOCKING FACTOR 1	Interproscan
PTHR12858 all species →	RIBOSOME BIOGENESIS PROTEIN	Interproscan
PTHR46682 all species →	ADHESION G-PROTEIN COUPLED RECEPTOR V1	Interproscan
PTHR19879 all species →	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan
PTHR12411 all species →	CYSTEINE PROTEASE FAMILY C1-RELATED	Interproscan
PTHR24033 all species →	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR22168 all species →	TMEM26 PROTEIN	Interproscan
PTHR12086 all species →	EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0034451 all species →	Cellular Component	centriolar satellite	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan
GO:0000462 all species →	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000479 all species →	Biological Process	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0030688 all species →	Cellular Component	preribosome, small subunit precursor	Interproscan
GO:0034511 all species →	Molecular Function	U3 snoRNA binding	Interproscan
GO:0001965 all species →	Molecular Function	G-protein alpha-subunit binding	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007194 all species →	Biological Process	negative regulation of adenylate cyclase activity	Interproscan
GO:0010855 all species →	Molecular Function	adenylate cyclase inhibitor activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0071277 all species →	Biological Process	cellular response to calcium ion	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0051603 all species →	Biological Process	proteolysis involved in protein catabolic process	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0000281 all species →	Biological Process	mitotic cytokinesis	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan
GO:0010975 all species →	Biological Process	regulation of neuron projection development	Interproscan
GO:0043014 all species →	Molecular Function	alpha-tubulin binding	Interproscan
GO:0060285 all species →	Biological Process	cilium-dependent cell motility	Interproscan
GO:0072686 all species →	Cellular Component	mitotic spindle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01363	CTSB; cathepsin B	EC:3.4.22.1	Glycosaminoglycan binding proteins	ko00536	deepkoala
K14799	TSR1; pre-rRNA-processing protein TSR1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.