Gene detail

Detailed information of g4836.t2 in Acropora digitifera

Genomic Location: chr2Alt:33433412...33445372
NR annotation: XP_029193426.2, elongation factor-like GTPase 1 isoform X2 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g4836.t2

ATGAGGACCACGACAGCTCAGCATCTCTCTGAACTTCAGAAAAACCCAAAAAATATAAGAAATATCTGTATATTGGCACATGTAGATCATGGAAAAACAACAATAGCTGATGCTCTGGTAGCCAGCAATGGGATAATTTCACAGCGTTTGGCAGGAAAGCTGAGGTACATGGATAGCAGAGAAGATGAACAACTCAGAGGAATTACAATGAAATCAAGTGCAATTTCTTTGCTTTTTTCAAAAGAAAATGAAGAATTTATAGTAAATCTTATTGACTCTCCTGGCCATGTGGATTTCTCCAGTGAGGTTTCAACTGCTGTTCGACTGTGTGATGGTGCAATTGTTGTCGTAGATGTAGTGGAAGGAGTGTGTCCACAGACCCACGTGGTGTTGCGGCAAGCTTGGTTAGAAAATATTAGACCATGTCTGGTGTTGAATAAAATAGACCGGCTCATAACAGAGCTGAAGTATTCTCCTACAGAGGCACACTTTCATTTGCAACAGACTCTTGAAAAGGTGAATGCCGTGATGGCTGCATTGTTTACTAGCGAGGTCTTGGAAAAAAATTCCTCCAAAGCTGCACCAGTGAACGACAAGAACAAGAAGATTCTAAAGGATGAAGGGGCCGTTTCTATCGATGAATGGAGCTCGGGATTAGAGGAAACCGATGACTCTTCCTTGTATTTTTCACCTGACTTGGGCAACGTTCTGTTTAGCAGTGCCATCGATGGCTGGGGATTTAGCATCGACGACTTCGCCAGAATGTATTCCAGTAAACTTGGCATTAATGAGGGGATTCTAAAAAAGACTCTGTGGGGCGACTATTATCTTCACGCCAAATCGAAGAGAATCCTTGGAGGAGCTCAAGCCAAAGCGAAGAAACCGCTGTTTGTTCAATTTGTGTTGGAGAATCTCTGGGCGGTTTATGATGCTCTTGTGAGGAGGGACAAAATCAAAACGGATCAGATTGTGAAATCTCTGAATTTGAAGATATCCGCTAGAGATAGCAGACACACTGATGGCCGAGTCCATCTTAAAGCTTTGTTTGATCAATGGCTTCCCTTGTCCGCCTCTTTGCTGTCCATGGTCGTTGACAAACTTCCGAGTCCGATGGAAATTCACAGCGAGCGAGTGGAAAAGCTGATGTGTAGCGGCCTAAGAACATTCGACTCATTGCCTGACAAGACACAAAGCTTGAAGCAAGATTTTCTTGCCTGCTCTTCCGCCGATGATGCGCCTGTCATTGTGTTTGTTTCGAAAATGTTTGCTGTTGAAGATAGTGTCCTTCCAAAACACAGGAAAAGGCCTCTAACGCAAGAGGAAATTGCGGCTCGACGGGAGCAAGCCCGACAGAGGCACGCTGAGATGTTGGCAAGCAATTCCCGTCTTGAAAATGGAACCCCTCTCATCCTTGAACCTGCTGGAGTAGAGAAAAACGAAAATGAAAACTGCGAAAAACAAGAAAAGCTAACCAAGAATAAAGACATTCCTAAGAACCACGTGCTGGCGTTCGCACGAGTCTACAGCGGAAGCATAAAGAAGGGTCAGCAGCTATACGTTCTGGGACCTAAACATGACCCACGAGATACTCCCTGTCAAAACATGGCCCCGTCGGATGCCCAAGATCCATCGCTTTCGAATAGTGTTAAAGATGGCATAAGCGAGGGTCTATCCGCAGCCAAATCAGTGGACAGAGGTACAAACCAGCACGTGGCAGCTTTCACTGTGCAAGATCTCTACTTGCTGATGGGTCGAGAACTCGAAAGCCTCGATTCCGTGCCGGCCGGGAATGTCCTTGGGATAGGTGGTCTGGACAGTCACGTACTCAAGTCTGCGACAATCTCCAGTACTGTCAGGTGTCCTCCCTTCACTGCGCTTCCAATGGAGGCTCGACCAATCGTCCGTGTGGCTGTGGAGCCAGTCCACCCGGCCGATATGCCATCGCTGGCCAGGGGACTGAGGCTACTGAATCAGGCCGATCCTTGTGTGGAGACGTTTGTGCAAGAAACTGGTGAGCACGTGATTGTTGGTGCAGGCGAGGTCCATCTGCAGCGCTGCATTGATGATCTCGAGCAGCGCTTCGCTGGAATCAAGCTGAACGTATCGGCGCCTATTGTTCCGTTCAGGGAAACCATTGTACTACCACCCACTGTGGACAGAGTGAACGAGGCCATTGTCAGCGAAACCAGCACTGTGCAAACCAAACAGATTGATACCGAAGAGGGAGGGGAGGGAAATAAGACTACCCTGGACAAAGACAAAGGTCTGATTGAAATCAAAACCGCAAACAGGATGTGCACTTTGCATATTAGAGCAGTGCCGCTTCCGGCGGAAGTGACGCGGTTACTTGACAGCAAAAGCGATTTGATCAAGGTTTTGGTGACAGTTTCGTCTGCCTCGACTGTCACTGAACGAAGGCAGTTGGCTTCTGAAGTTAACGCGTCCACTAGAGAAGCGTTGAAAACGTTTTATCAAGATCTATGTGCCGCTTTTAAGGAGGCGGGAAACGCGTGGCACGGAGCAGCGGATAATATCTGGGCGTTTGGTCCGCGCCGGATTGGAAGCAATGTGTTGTTAAACAGGGTCCCTGGATATAATCGACCTTCTATGTGGCAAAGTGTAGGGATAGCAGACAATGTAAATCAGCCTCCTGCGGATGCAAGTAACCGCGATTATGACAACAGTGTAGTCAGCGGCTTTCAGTTAGCGAGCCTTGCAGGACCTCTTTGCGAAGAACCTTTAATGGGCGTGTGTTTCGTCATAGAAAAATGGACTCTACTAGAAAAGGAAATGACGTCATTGGTGGCTAGTGATACAGGTTCGACCGGATTGACCAGTTCTGGGAAAGAAGAATCTGGTCATGAAGAAAAAACGAATGACGAAAACAATTTGAAGGACGTTGAAATTACGGAGATTAACGAGGGTGCTGGGGGAGACCAGGACGAAACTAACGAAGTAGACGAAGAGACTTCGTTGACTACACAGGAATTACGAAATGACAACTCTACAAACACTAGCTCTAGGGATAACAGTCCTCCCAAAAAACTAGATAGGTTCGGTCCATTTTCCGGGCAGCTCATGTCCGCTGTCAAGGAAGGCTGCAGGCGCGCTTTTCTGCTTCAACCAGTTCGCCTAATGGCAGCTATGTACACCTGCGACATCCAAGCTACTGCTGAGGTCTTGGGACGAATGTACGCTGTTGTTGCAAAGCGAGAGGGACGTGTGTTGAAGGAAGAGATGAAGGAAGGCTCTGATGTGTTTGACGTCACGGCTGTTCTCCCGGTGGCCGAGAGTTTTGGTTTCTCTGAAGACATTAGAAAACGCACGAGTGGACTGGCTAATCCACAGCTTGTCTTTAGCCACTGGGAGGTTGTAGATATTGACCCTTATTGGGTCCCAACGACCGAGGAAGAGTACACTCACTTCGGTGAGAAAGCCGACTCGGATAACCAGGCCCGAAAATACATGAACAGTGTGCGGCGAAGGAAGGGGCTGTACGTGGACGAAAAGACTGTTGAACATGCAGAAAAGCAAAGGACCTTGAAAAAGTAA

Transcript

chr2Alt.g4836.t2

GAAATTGCATCACAACATGGAGGACCTGATGAAATGTGTTTGAATAAAAACTGATTTTTAGAAAATCGGTCTTCTTTGTGGTATTTTAGTGATAGGGATAGAAAAATGAGGACCACGACAGCTCAGCATCTCTCTGAACTTCAGAAAAACCCAAAAAATATAAGAAATATCTGTATATTGGCACATGTAGATCATGGAAAAACAACAATAGCTGATGCTCTGGTAGCCAGCAATGGGATAATTTCACAGCGTTTGGCAGGAAAGCTGAGGTACATGGATAGCAGAGAAGATGAACAACTCAGAGGAATTACAATGAAATCAAGTGCAATTTCTTTGCTTTTTTCAAAAGAAAATGAAGAATTTATAGTAAATCTTATTGACTCTCCTGGCCATGTGGATTTCTCCAGTGAGGTTTCAACTGCTGTTCGACTGTGTGATGGTGCAATTGTTGTCGTAGATGTAGTGGAAGGAGTGTGTCCACAGACCCACGTGGTGTTGCGGCAAGCTTGGTTAGAAAATATTAGACCATGTCTGGTGTTGAATAAAATAGACCGGCTCATAACAGAGCTGAAGTATTCTCCTACAGAGGCACACTTTCATTTGCAACAGACTCTTGAAAAGGTGAATGCCGTGATGGCTGCATTGTTTACTAGCGAGGTCTTGGAAAAAAATTCCTCCAAAGCTGCACCAGTGAACGACAAGAACAAGAAGATTCTAAAGGATGAAGGGGCCGTTTCTATCGATGAATGGAGCTCGGGATTAGAGGAAACCGATGACTCTTCCTTGTATTTTTCACCTGACTTGGGCAACGTTCTGTTTAGCAGTGCCATCGATGGCTGGGGATTTAGCATCGACGACTTCGCCAGAATGTATTCCAGTAAACTTGGCATTAATGAGGGGATTCTAAAAAAGACTCTGTGGGGCGACTATTATCTTCACGCCAAATCGAAGAGAATCCTTGGAGGAGCTCAAGCCAAAGCGAAGAAACCGCTGTTTGTTCAATTTGTGTTGGAGAATCTCTGGGCGGTTTATGATGCTCTTGTGAGGAGGGACAAAATCAAAACGGATCAGATTGTGAAATCTCTGAATTTGAAGATATCCGCTAGAGATAGCAGACACACTGATGGCCGAGTCCATCTTAAAGCTTTGTTTGATCAATGGCTTCCCTTGTCCGCCTCTTTGCTGTCCATGGTCGTTGACAAACTTCCGAGTCCGATGGAAATTCACAGCGAGCGAGTGGAAAAGCTGATGTGTAGCGGCCTAAGAACATTCGACTCATTGCCTGACAAGACACAAAGCTTGAAGCAAGATTTTCTTGCCTGCTCTTCCGCCGATGATGCGCCTGTCATTGTGTTTGTTTCGAAAATGTTTGCTGTTGAAGATAGTGTCCTTCCAAAACACAGGAAAAGGCCTCTAACGCAAGAGGAAATTGCGGCTCGACGGGAGCAAGCCCGACAGAGGCACGCTGAGATGTTGGCAAGCAATTCCCGTCTTGAAAATGGAACCCCTCTCATCCTTGAACCTGCTGGAGTAGAGAAAAACGAAAATGAAAACTGCGAAAAACAAGAAAAGCTAACCAAGAATAAAGACATTCCTAAGAACCACGTGCTGGCGTTCGCACGAGTCTACAGCGGAAGCATAAAGAAGGGTCAGCAGCTATACGTTCTGGGACCTAAACATGACCCACGAGATACTCCCTGTCAAAACATGGCCCCGTCGGATGCCCAAGATCCATCGCTTTCGAATAGTGTTAAAGATGGCATAAGCGAGGGTCTATCCGCAGCCAAATCAGTGGACAGAGGTACAAACCAGCACGTGGCAGCTTTCACTGTGCAAGATCTCTACTTGCTGATGGGTCGAGAACTCGAAAGCCTCGATTCCGTGCCGGCCGGGAATGTCCTTGGGATAGGTGGTCTGGACAGTCACGTACTCAAGTCTGCGACAATCTCCAGTACTGTCAGGTGTCCTCCCTTCACTGCGCTTCCAATGGAGGCTCGACCAATCGTCCGTGTGGCTGTGGAGCCAGTCCACCCGGCCGATATGCCATCGCTGGCCAGGGGACTGAGGCTACTGAATCAGGCCGATCCTTGTGTGGAGACGTTTGTGCAAGAAACTGGTGAGCACGTGATTGTTGGTGCAGGCGAGGTCCATCTGCAGCGCTGCATTGATGATCTCGAGCAGCGCTTCGCTGGAATCAAGCTGAACGTATCGGCGCCTATTGTTCCGTTCAGGGAAACCATTGTACTACCACCCACTGTGGACAGAGTGAACGAGGCCATTGTCAGCGAAACCAGCACTGTGCAAACCAAACAGATTGATACCGAAGAGGGAGGGGAGGGAAATAAGACTACCCTGGACAAAGACAAAGGTCTGATTGAAATCAAAACCGCAAACAGGATGTGCACTTTGCATATTAGAGCAGTGCCGCTTCCGGCGGAAGTGACGCGGTTACTTGACAGCAAAAGCGATTTGATCAAGGTTTTGGTGACAGTTTCGTCTGCCTCGACTGTCACTGAACGAAGGCAGTTGGCTTCTGAAGTTAACGCGTCCACTAGAGAAGCGTTGAAAACGTTTTATCAAGATCTATGTGCCGCTTTTAAGGAGGCGGGAAACGCGTGGCACGGAGCAGCGGATAATATCTGGGCGTTTGGTCCGCGCCGGATTGGAAGCAATGTGTTGTTAAACAGGGTCCCTGGATATAATCGACCTTCTATGTGGCAAAGTGTAGGGATAGCAGACAATGTAAATCAGCCTCCTGCGGATGCAAGTAACCGCGATTATGACAACAGTGTAGTCAGCGGCTTTCAGTTAGCGAGCCTTGCAGGACCTCTTTGCGAAGAACCTTTAATGGGCGTGTGTTTCGTCATAGAAAAATGGACTCTACTAGAAAAGGAAATGACGTCATTGGTGGCTAGTGATACAGGTTCGACCGGATTGACCAGTTCTGGGAAAGAAGAATCTGGTCATGAAGAAAAAACGAATGACGAAAACAATTTGAAGGACGTTGAAATTACGGAGATTAACGAGGGTGCTGGGGGAGACCAGGACGAAACTAACGAAGTAGACGAAGAGACTTCGTTGACTACACAGGAATTACGAAATGACAACTCTACAAACACTAGCTCTAGGGATAACAGTCCTCCCAAAAAACTAGATAGGTTCGGTCCATTTTCCGGGCAGCTCATGTCCGCTGTCAAGGAAGGCTGCAGGCGCGCTTTTCTGCTTCAACCAGTTCGCCTAATGGCAGCTATGTACACCTGCGACATCCAAGCTACTGCTGAGGTCTTGGGACGAATGTACGCTGTTGTTGCAAAGCGAGAGGGACGTGTGTTGAAGGAAGAGATGAAGGAAGGCTCTGATGTGTTTGACGTCACGGCTGTTCTCCCGGTGGCCGAGAGTTTTGGTTTCTCTGAAGACATTAGAAAACGCACGAGTGGACTGGCTAATCCACAGCTTGTCTTTAGCCACTGGGAGGTTGTAGATATTGACCCTTATTGGGTCCCAACGACCGAGGAAGAGTACACTCACTTCGGTGAGAAAGCCGACTCGGATAACCAGGCCCGAAAATACATGAACAGTGTGCGGCGAAGGAAGGGGCTGTACGTGGACGAAAAGACTGTTGAACATGCAGAAAAGCAAAGGACCTTGAAAAAGTAATGCCACGTTTCAATGATTCAAATCGGGAGACGGTATCAAGGTAAACAAAGGCGTGTTGCGAAGGATCTAGAAACAGCGGAGAGTTTGTCGAAATGAGCTGGGTTTGTATATTGGGTCTACAAATGAATATGGACAAAAGGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7Z2Z2	Elongation factor-like GTPase 1 OS=Homo sapiens OX=9606 GN=EFL1 PE=1 SV=2
Q8C0D5	Elongation factor-like GTPase 1 OS=Mus musculus OX=10090 GN=Efl1 PE=1 SV=1
O74945	Ribosome assembly protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ria1 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00679 all species →	EFG_C	Elongation factor G C-terminus	Domain	Interproscan
PF00009 all species →	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF14492 all species →	EFG_III	Elongation Factor G, domain III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000795 all species →	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR000640 all species →	Domain	Elongation factor EFG, domain V-like	Interproscan
IPR035647 all species →	Homologous_superfamily	EF-G domain III/V-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR041095 all species →	Domain	Elongation Factor G, domain II	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42908 all species →	TRANSLATION ELONGATION FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0042256 all species →	Biological Process	cytosolic ribosome assembly	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14536	RIA1; ribosome assembly protein 1	EC:3.6.5.-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g4836.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.